RNA id: TU1886618


Basic Information

Item Value
RNA id TU1886618
length 229
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1648648
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 65107937 ~ 65108190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCACCACACTGTAGTAAATGTTTTCTGCCAGTCACAAGATACCCTGTGTGTTAAAAGGTGTATTAGGGTGTGTTAAAGGTGTGTTAAAGAGGTGTATTTTGTGactttcatcaaatcaaattgtatttgtcacattctctgaatacaacaggtgtaggtagaccttacagtgaaattcttacttttcaagcccttaaccaacaatgcagttttaagaaaaataagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886615 lncRNA upstream 18830 65088702 ~ 65089107 (+) True G1648645
TU1886605 lncRNA upstream 47193 65060408 ~ 65060744 (+) True G1648636
TU1886595 lncRNA upstream 65889 65041750 ~ 65042048 (+) True G1648627
TU1886594 lncRNA upstream 67602 65040093 ~ 65040335 (+) True G1648626
TU1886584 lncRNA upstream 80684 65025344 ~ 65027253 (+) True G1648623
TU1886619 lncRNA downstream 12352 65120542 ~ 65120969 (+) True G1648649
TU1886624 lncRNA downstream 27174 65135364 ~ 65135760 (+) True G1648654
TU1886576 lncRNA downstream 35444 65143634 ~ 65144145 (+) True G1648617
TU1886629 lncRNA downstream 36532 65144722 ~ 65144947 (+) True G1648659
TU1886660 lncRNA downstream 36813 65145003 ~ 65221664 (+) False G1648660
XM_036955409.1 mRNA upstream 4472 65077380 ~ 65103465 (+) True LOC110498306
XM_036955407.1 mRNA upstream 37709 65045411 ~ 65070228 (+) False wdr32
XM_036955408.1 mRNA upstream 37709 65045412 ~ 65070228 (+) True wdr32
XM_036955404.1 mRNA upstream 87338 64971239 ~ 65020599 (+) False LOC110498417
XM_036955413.1 mRNA downstream 495 65108685 ~ 65142820 (+) False manba
XM_036955410.1 mRNA downstream 496 65108686 ~ 65142820 (+) False manba
XM_036955411.1 mRNA downstream 496 65108686 ~ 65142820 (+) False manba
XM_036955412.1 mRNA downstream 496 65108686 ~ 65142820 (+) True manba
XM_021574950.2 mRNA downstream 121494 65229684 ~ 65239437 (+) False nat8
TU1886551 other upstream 126994 64980364 ~ 64980943 (+) False G1648608
TU1886125 other upstream 978869 64128208 ~ 64129068 (+) True G1648296
TU1885128 other upstream 1716105 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 1903880 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 2030794 63075149 ~ 63077143 (+) True G1647411
TU1887705 other downstream 353583 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 436187 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 470249 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 492770 65600960 ~ 65602416 (+) True G1649319
TU1887742 other downstream 626424 65734614 ~ 65812816 (+) False LOC110498653

Expression Profile