LOC110498409 (LOC106592792)


Basic Information

Item Value
gene id LOC110498409
gene name LOC106592792
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63380908 ~ 63414582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498409
ATGATTGTGGAACATGCAGACATTCTAGAACTCAACGCCATCGTTGGAACCCCGAGGAAAGAGAATGTTATGACGGAACAGGAAAAAGAGTGGAGTCAGACATCCTTGACAGACGGGAGTTCTCTCCCAGCCGCCTCAGAGCAGATAGCAGAGCTGAGGGCTGagctggagaagagagagcaggccCTGAAAGACGACCAGGAGGAACGAGACACACTCGTCATCACGCAGGAAGAACTGGACCGACAGAACAGGGAAGCTACACAGCATGTGATCTCAGTGAAGGAGAAGCTCTCTGTTCAGCTGAAGGAGTCTGAGACTGAGGTGTTCAGGTTGCAGTCAGAGCTCAGTACCACCACTGACCAGAGGGTGGCGCTACAGGAAGAACTACAGGCCCAACAGGAGAAACTGAGCTAGAGTGCTTACACCCTGAACCACCTCCACATGGGCAAGCAGCAGCTGGAGGCCACCGTCAAGGAGTTGAGGGAGAAACTTGGACGGGCAACAGCGATGGGCAAAGAGAACCAGGTGCTCCAGAGAACCgtacaggagagggaggagcagcTGTCTGCTGCCCGGGCAGAGCTGTGCgaggctggggagagagggagagaatccgGGGGGTCcggagaggagctggaggagctcAGGAGAGAGCTGACTGAGATGAGGAGCTCCCAGGAGAAGGTGATTTTCAGAAGACTacgagatggagatggagaagcAGAGGCTGAAGACAGAGGCTGACCAGGCCCAGGGGAGGTTAGAGGAGCTGGCCAGGCAGGTCAGGGAGGTCCAGGATGCTCTCGGCAGGACCGTCCTGGAGAAGGACACCCACATCGAGGCTTTGAAGCTGGAGAAGAGCCAGCTGGAAGGGGAGCTGATCCAGGCAGAGAGGGGCCTCCAGGAGCAGGTCAGGCAGTACCAGCAGACCATCGAGGAGCTGACCGCTGCCCGCTCCATGGACGCCTCGGCACTGCAGACGGCGCATGAGAGGAGGGTGAAGTTGAACCTGGAGAAGAACCTGGAGAAGAACCTGAGGGAGCTGGAGGCCGTGGTCCAGGCAGCCACCCAGGAGGCTGAGACCCTGAGAGCCAACATGGCCGCCGCCCAGAGGGAGCTGGAGGCCGGGGTCCAGGCAGCCACCCAGGAGGCTGAGACCCTGAGAGCCAACATGGCCGCCGCCCAGAGGGAGCTGGAGGCCGGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGCCAACATGGCCGCCACCCAGAGGGAGCTGGAGGCCGGGAGGGAGCTGGAGGCCAGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGCCAACATGGCCGCCACCCAGAGGGAGCTGGAGGCCAGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGCCAACATGGCCGCCACCCAGAGGGAGCTGGAGGCCAGGAGGGAGCTGGAGGCCAGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGGAGCTCTGGAGGAGAAGGACAAGCAGCTGGGAGGCGTGAAGGAAGACAACAGCCACCTGAAGGAGGAGATAGAGCGTCTGAGGGACCAGCAGAGTAGACCCCAGCCCCCCGGCCTGGCTGAGCCACGCACCCCGGACATCATCAACGAACTGGAGACGGACATCACCCAGCTGAAGACCTCAGGAGATGCCTGGAGGGGGACCATAGAGGAGCATAGAGGAGCATAGAGGACCATAGAGGACCATAGAGGAGCAGCGGGggcacctcctctcctcccagcagTCTCTCCTGGCGCAGCAGAATGAGTTGGAGCAGGCCCACCAACGCCacgagcagagcagagagaactaCGATAGGCTGATCCACGCGAAGGACGAGGAGATTGGGCGCCTGCAGCAGGAAGTAGTAGATCACCTCGGCCCTACCCGATACTCCCAGGAACAGGAAGTGGTCATTCTCCAACGGGAAGACGAGACCAAGTCGTCCCTGAATAACAGGGAGAACGGCAACGAGAAACACGACCTGTccaagatggaggtagagagactaGTGAAGGGCATTAAGGAGAAGGAGACGGAAATCAGCCAGCTGAATGGGAAGAACCAGAACCTCACCAGACAGCTGGACCAGCTGGTGGTCTccagagaggagatggggaagcTCAGCCAGATGGTCTAGCAGAAAGACGTAGAGATCCAGGCGCTGCACTCCCACGTCTCCCTGGGGGGGACGAGGCCACAGCCAAGACGTGATGTTCCTCCTCCAGCAGCTGCGGGCCAATGCCGTGGAGAGAGAGCAGGTCCTGGCGGTGCTGAATGAGAAGATGAGGGAGAACAGCCGGCTTAGGGGGGACTACCAACGCATCACGGACATTGTAGCAGGGAAGGAGGCTGTGCTCCTCAAGGTCCAGCAGGAGAACTTGAGGCTGTCCACCATGTCTGACCCCTCAGCGAGTCGAGAGATGTTCAGAGAGACCATTCAGAATTTGTCACGGATCATCAGGTATTGTTTtGTGGATGCTGACAACGACTGCACCTCCGATCTCTCTCTGCGTGGACTACAGCCGTCTGATCCACAGCTATGAGCAGAAGGAGAGGAAGCTCGGGCAGTCTCAGTCACGAACTAGCCCACGTCCAACAGACCATCAGCCGGCTGAGCAGTACTAAAGATGTCCTCCTGGGGAAACTGGACAGTGTGGCGCAGAGTCCCCAAGTCACCCCACTGTCTGCTGCCCAGCCTCCTGCTGCAGTGGAACCTCCCAGACACCAGGTGGCAGCACCTGCAACACCAGGGAACCAGGAAGGACTGAGACAGGAGCTGGAGTCTCTGAGAGCCCTCCTGTCTGAGAGGGAGACTATGATCAGGACCTTGCAGGAGTACAACAACCACCATCTGTCTAACTCGGCCCAGGTGTCAGAGAGCGAGCAGCGTGGCCAGGCCGACGAGGCCAGAcagctcagagagagactggactCCCTGCAGCGCTCTGTCAGGGAGAAAGACCTGCTCATTAAGACTGAAGGAGACCAGCTCAACCAgGTGAGTGAGAACCTGAGGAACCGTGAGAGCGACAACGAGGTGTAAAAACAGGCCGTGACCAACCTGAAGGAGCGAGCTCTTATCCTGGAGATGGATACCAGGAAGCTGAAGgaTGAGAACGAGGCCCAGCGGTGCCGGGAGAAGGAGTCAGAGTTCAGAGCTCTGCAGGagaccgTAAACTAG
>TU1885128
ccTGGAGAAGAACCTGGAGATGAGAACATGAGAGCTAACATGGCCGCCACCCAGAGGGAGCTGGAGGCCGTGGTCCAGGCAGCCACCCAGGAGGCTGAGACCCTGAGAGCCAACATGGCCGCCGCCCAGAGGGAGCTGGAGGCCGGGGTCCAGGCAGCCACCCAGGAGGCTGAGACCCTGAGAGCCAACATGGCCGCCGCCCAGAGGG
>TU1885129
gagcagagagaactaCGATAGGCTGATCCACGCGAAGGACGAGGAGATTGGGCGCCTGCAGCAGGAAGTAGTAGATCACCTCGGCCCTACCCGATACTCCCAGGAACAGGAAGTGGTCATTCTCCAACGGGAAGACGAGACCAAGTCGTCCCTGAATAACAGGGAGAACGGCAACGAGAAACACGACCTGTccaagatggaggtagagagactaGTGAAGGTATTTCC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498409 False 3227 mRNA 0.54 15 63380908 63414582
TU1885128 False 208 TUCP 0.67 1 63391625 63391832
TU1885129 True 228 lncRNA 0.54 1 63392810 63393037

Neighbor

gene id symbol gene type direction distance location
rtf1 rtf1 coding upstream 8573 63348949 ~ 63372335 (+)
LOC110498286 NA coding upstream 34616 63339785 ~ 63346292 (+)
LOC110498285 NA coding upstream 64092 63312561 ~ 63320421 (+)
LOC118941523 NA coding upstream 70267 63309348 ~ 63310641 (+)
LOC110498284 chp1 coding upstream 71665 63292569 ~ 63309243 (+)
fbln5 fbln5 coding downstream 20742 63435324 ~ 63500172 (+)
LOC110498294 LOC106599381 coding downstream 92204 63506786 ~ 63534703 (+)
plek2 plek2 coding downstream 143221 63557803 ~ 63565484 (+)
LOC110514319 rbm25 coding downstream 233787 63648369 ~ 63719010 (+)
ccdc177 LOC106586969 coding downstream 778927 64193509 ~ 64201734 (+)
G1647422 NA non-coding upstream 733 63310957 ~ 63380175 (+)
G1647510 NA non-coding upstream 25124 63354114 ~ 63355784 (+)
G1647511 NA non-coding upstream 26107 63354337 ~ 63354801 (+)
G1647507 NA non-coding upstream 42580 63338065 ~ 63338328 (+)
G1647504 NA non-coding upstream 46369 63330144 ~ 63334539 (+)
G1647529 NA non-coding downstream 2549 63417131 ~ 63418627 (+)
G1647532 NA non-coding downstream 10862 63425444 ~ 63425999 (+)
G1647536 NA non-coding downstream 16343 63430925 ~ 63431170 (+)
G1647537 NA non-coding downstream 17176 63431758 ~ 63432043 (+)
G1647539 NA non-coding downstream 19786 63434368 ~ 63434704 (+)
G1647477 NA other upstream 176851 63202756 ~ 63204057 (+)
G1647411 NA other upstream 303765 63075149 ~ 63077143 (+)
G1647342 NA other upstream 362220 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 887189 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1235618 62144183 ~ 62145290 (+)
G1648296 NA other downstream 713626 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1565782 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2047191 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2129795 65544377 ~ 65545055 (+)
G1649309 NA other downstream 2163857 65578439 ~ 65582582 (+)
G1647524 NA non-coding downstream 1018 63394055 ~ 63394273 (+)
G1647528 NA non-coding downstream 20436 63413473 ~ 63414407 (+)
LOC110498409 LOC106592792 other upstream 978 63380908 ~ 63414582 (+)

Expression


Co-expression Network