srsf5a (LOC106611464)


Basic Information

Item Value
gene id srsf5a
gene name LOC106611464
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62486921 ~ 62493719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585447.2
ATCCGGAGTTTTGTGTAACTTGTTTTGATAGGTCTAAGAACACACCCATTCACCTTGGTCCTGAAGTACATCCGGTTACCTCTCGCTGTCGCCATTTTGATACACAAACGAGTGAGAAGTCACGAAAAGACGACAGAAAGAGTATCATCATGAGTGGATGTCGTGTGTTTATCGGCCGTTTGAGCCCCCACGCCCGTGAGAGAGACGTGGAGAAATTCTTCAAGGGATATGGACGGATCCGAGAAGTAAATTTGAAGAACGGATTCGGCTTTGTGGAGTTTGACGACCACAGAGATGCGGATGATGCCGTATATGAGCTGAATGgcaaggaactctgtagtgaaAGGGTGACGATAGAGCATGCCCGCTCCagaagagggaggggtggtggaccAGGGatggggggtggtggtggaggaggaggaggacgctTCTCACCTCGTTTCAGCAGCTACCGCCAGGGCTCTGGCGGTCATAGTGGTGGCTCCAGTAGGTatggtcccccggtgcgaacgGAGCACAGAATCATTGTGGAGAACCTGTCGTCACGGATCAGTTGGCAGGACCTGAAAGACCTGATGAGGAAAGCCGGAGAAGTCACCTTTGTGGATGCACACAGAACCAACAAGAATGAAGGGGTGGTGGAGTTCGCATCACACAGTGATATGAAGAATGCCATTGATAAGCTGGACGGAACGGACTTGAATGGGCGCAAGTTGAAACTGTCTGAGGATCGCAAGAGCCGCCACAGCAGGAGTCGTTCCCGCGGCTCTCGTAGCTACTCCCGGTCCCGTAGCCGTTCCCCGCGCTCCAAGTCCCGTAGCAGGAGTCGTAACCGCTCCAGGAGCCCCCGATCTCGCTCGGCCAGCCGTACCCCGGAGAAGAAGCCTTCCTCTGCAGGAGCGGGCAGGGCTGCACATCGCTCCACCTCGCGCTCCCCGTCCCGGTCCAGATCCCCTGCCCCTCGCTCCCGTACCCCTCCCCCACGCTCCCGTTCTCGCACGCCTCCTCCCAGTTCCCCTGCCCCGGCCCGGAAGCAGTCTCCGTCCCGGTCTCGCTCCCCTTCGGTTGAGAGCCAGCACTGAGCCCCACTAGGGGTGTGTGTAGTTCGGTGTTGTAGTGCAGTGGTGGCTGGAGGGAGGACCGTCTCAttggaatggctggaatggaatgagaGGAACAGAATCCTTCATAGCGTTCCATTAAATCCATTCCATCTATTCCAATAAGCCTGTCCTGATTTTTAATGTGACCACCAGCCTCATAGTGGTATGGACTGAAGAGTTGTCATGCTGAGACCATGGCGgcctgcttgcttgcttgctagtGTGGAATGAATGGAGAGGCTTGCCTTTGGCGACACACTCCCACAATCTCTCATTTTTTTAAAATCAGAGAATTGGTTGTTGTGCCAGTATCTTGGATGCTCTGTAATGTTTTTTTCCTCTGTTTTGGGAGCCTTTTGTGTTTATAGGTCGGATCATGTTCAACTtctaattgtttttgtttttttgccataaTTGAATAATTAAAACATGTTCCTTGGGGAAAACTGAACCGTTTAAGGAAacagtgtgatttttttttttttttttagatcttTTGATTGGGTCACATTCCTGTTGATTTGTCTTATCGTTCTCACTGCAGAGTGTACGTCTCATTGTGATTTAATGACATCTGTACCATTTGAAAGTTAAACTTTCTGTCCCCGAGTTTTCTGTTATGAGTCTAACCAATACAAGGTTATATTTCCATCA
>TU1883744
TCTCGCTGTCGCCATTTTGATACACAAACGAGTGAGAAGTCACGAAAAGACGACAGAAAGAGTATCATCATGAGTGGATGTCGTGTGTTTATCGGCCGTTTGAGCCCCCACGCCCGTGAGAGAGACGTGGAGAAATTCTTCAAGGGATATGGACGGATCCGAGAAGTAAATTTGAAGAACGGATTCGGCTTTGTGGAGTTTGACGACCACAGAGATGCGGATGATGCCGTATATGAGCTGAATGgcaaggaactctgtagtgaaAGGGTGACGATAGAGCATGCCCGCTCCagaagagggaggggtggtggaccAGGGatggggggtggtggtggaggaggaggaggacgctTCTCACCTCGTTTCAGCAGCTACCGCCAGGGCTCTGGCGGTCATAGTGGTGGCTCCAGTAGGTatggtcccccggtgcgaacgGAGCACAGAATCATTGTGGAGAACCTGTCGTCACGGATCAGTTGGCAGGTGAGCGGTTACCCTCATCTGGTTCAATGTGATACAAAAACAATTATCCGTTACTTAATCTGGTACTGCCTTTTTTAGTCAGTGTGAAGCAgcatttatttaacattttattgaaacatgctattttttttattgataaaaaaaaacgtAGCAATATGTTCAATAGGTGACTAGAACGGCAAGGACCCGTTACGAATTCAGAATGGTTTATTTCTTGACTTCGTTTTAACTGTATCTTTCAAATAATAAGCACCTCTTAGACTTAAAGGTAAATGTAACCGAACACATCTTAACCcccttttttttatatatatatatatatatttttttttttataaatgagcTTAAAATTCTTATCTGGTTATTAGTTTATGAAGGAGTTGCATGCACTGCCTCCCCTGGAGGTGTCTGATGTGCATAGCGCCCTCTGCTGGTTGTGTTTTCAATAGTGTCCATTTGGTGCCTCTCCTTACACGCAGTTGCCGCTGGTCTAAATCTTGGCTGGGCCCCGTAGCTGGTGAAAGGGCTCTAGCGCAGGATAGCCTTAGGATGGTCCCTCGTAAAGCCCCAGTCTGGAGGttctgtggtctggtctggtggaaaacacccccccccccgactGCAGCCAGCCTGTAACTCCCTCAATCCACTCCACGTTCCCTACACTCTCCCGTTTGGTTCTTTTATCTGTTGCTGATGGAGCTGGGTGTGTTGACAGTTGGGCACACTGCACACCCTCTTCCTTCGTTCCTTCCCCTACTTGCTCTCTGGTGGTCCCTTGTGGAGGCTGGCCGGAGTCCGGGTCTGTCAAGGCTGAGGGAGGTCGTTTCTCAAGGGCTTAACACTGTGACTGCATTGGTTCCCATTGGTCCTCTATTTGGACAAGTGGCTCTTTGCTAATGTCTTCCTGGGTATGGAACGGTAAGTAACATATAACTCATGTGATTGGGTTTAAGGGTTGGGGAGGAACAGGAAGTAGAATTATATACCTTAGTCTTACCGGAGAACGCTTTCTATCAGTCTTTATGAGCCCTTATGGAATTATACTAGGCTACGTAATAGGTTAATGAAAGAAACCCCTTGATTAAAGTAGGAGTTTAAGGTCAAATAGAATTACATTGCATAGAATTATTTTTAAacgataccccccccccctaaaaccaCGATAGTTGTCAAACCTCTTAACATTTCCAAGCCGCCCTCTCCCGGAAGGAATTTCTTAAGTTCTCCCTGCCTTAGTAtcttctgtttaaaaaaataaataaatgtgtagTCTCCGTCAATCCTAGTTGTTAACGAACACCAAACAAATACAATACCAAGGAAACTAATAGTGTTACCATGTTTCTCCTATGGGTAAGATAAGTTAAACCAAGTTGGTCTACCCGCGAAGCTATTTCAGTGGCTCATCACTTAAAGCGGCCTCGTCTGAAAATGCTAAAACATCACATGATTTAGCGTGTTTTGGTTGGAAGTCAGTATTACGGGGTGGGTGGATTTTGTTGTCGTGGTTTACTGATTTAGTCTTTCCCAGGTTCACAGTAAACCCGTCTCAGCCACATTATACAGTCTGTTAGCTCGTCACTGACTCGTATGCTTCATCGTAGGACCTGAAAGACCTGATGAGGAAAGCCGGAGAAGTCACCTTTGTGGATGCACACAGAACCAACAAGAATGAAGGGGTGGTGGAGTTCGCATCACACAGTGATATGAAGAATGCCATTGATAAGCTGGACGGAACGGACTTGAATGGGCGCAAGTTGAAACTGTCTGAGGATCGCAAGAGCCGCCACAGCAGGAGTCGTTCCCGCGGCTCTCGTAGCTACTCCCGGTCCCGTAGCCGTTCCCCGCGCTCCAAGTCCCGTAGCAGGAGTCGTAACCGCTCCAGGAGCCCCCGATCTCGCTCGGCCAGCCGTACCCCGGAGAAGAAGCCTTCCTCTGCAGGAGCGGGCAGGGCTGCACATCGCTCCACCTCGCGCTCCCCGTCCCGGTCCAGATCCCCTGCCCCTCGCTCCCGTACCCCTCCCCCACGCTCCCGTTCTCGCACGCCTCCTCCCAGTTCCCCTGCCCCGGCCCGGAAGCAGTCTCCGTCCCGGTCTCGCTCCCCTTCGGTTGAGAGCCAGCACTGAGCCCCACTAGGGGTGTGTGTAGTTCGGTGTTGTAGTGCAGTGGTGGCTGGAGGGAGGACCGTCTCAttggaatggctggaatggaatgagaGGAACAGAATCCTTCATAGCGTTCCATTAAATCCATTCCATCTATTCCAATAAGCCTGTCCTGATTTTTAATGTGACCACCAGCCTCATAGTGGTATGGACTGAAGAGTTGTCATGCTGAGACCATGGCGgcctgcttgcttgcttgctagtGTGGAATGAATGGAGAGGCTTGCCTTTGGCGACACACTCCCACAATCTCTCATTTTTTTAAAATCAGAGAATTGGTTGTTGTGCCAGTATCTTGGATGCTCTGTAATGTTTTTTTCCTCTGTTTTGGGAGCCTTTTGTGTTTATAGGTCGGATCATGTTCAACTtctaattgtttttgtttttttgccataaTTGAATAATTAAAACATGTTCCTTGGGGAAAACTGAACCGTTTAAGGAAacagtgtgatttttttttttttttttagatcttTTGATTGGGTCACATTCCTGTTGATTTGTCTTATCGTTCTCACTGCAGAGTGTACGTCTCATTGTGATTTAATGACATCTGTACCATTTGAAAGTTAAACTTTCTGTCCCCGAGTTTTCTGTTATGAGTCTAACCAATACAAGGTTATATTTCCATCACCACTTTGGTCCCGTCTGTGATTCCAATCTACACCTCAGACAGACCTCGTGTAAATGAAACGCATTATAATTTACAGACAC

Function

NR:

description
serine/arginine-rich splicing factor 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585447.2 False 1760 mRNA 0.51 8 62486921 62493638
TU1883744 True 3368 TUCP 0.47 7 62487001 62493719

Neighbor

gene id symbol gene type direction distance location
LOC110504280 LOC106602928 coding upstream 1474 62466254 ~ 62485447 (+)
LOC118941522 LOC106591813 coding upstream 26614 62455117 ~ 62460307 (+)
lgals3a NA coding upstream 40977 62414368 ~ 62446035 (+)
cdkn3 cdkn3 coding upstream 64572 62419356 ~ 62422349 (+)
sos2 sos2 coding upstream 107404 62276111 ~ 62379517 (+)
LOC110504279 LOC106599953 coding downstream 6438 62500076 ~ 62602774 (+)
LOC110504278 LOC102780996 coding downstream 111266 62604904 ~ 62638126 (+)
LOC110512290 LOC106600942 coding downstream 162095 62655733 ~ 62771956 (+)
LOC100136022 NA coding downstream 391945 62885583 ~ 63042917 (+)
map3k9 map3k9 coding downstream 557179 63050817 ~ 63103044 (+)
G1646607 NA non-coding upstream 37881 62448808 ~ 62449040 (+)
G1646573 NA non-coding upstream 88932 62342250 ~ 62397989 (+)
G1646564 NA non-coding upstream 131370 62328750 ~ 62355551 (+)
G1646642 NA non-coding downstream 49506 62543144 ~ 62543659 (+)
G1646649 NA non-coding downstream 66568 62560206 ~ 62560803 (+)
G1646650 NA non-coding downstream 68128 62561766 ~ 62562776 (+)
G1646446 NA non-coding downstream 109304 62602942 ~ 62603952 (+)
G1646666 NA non-coding downstream 119875 62613513 ~ 62614196 (+)
G1646509 NA other upstream 341631 62144183 ~ 62145290 (+)
G1646294 NA other upstream 925837 61558041 ~ 61561084 (+)
G1646225 NA other upstream 1141767 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 1195080 61242422 ~ 61308910 (+)
G1646089 NA other upstream 1283569 61200860 ~ 61203352 (+)
G1647342 NA other downstream 523317 63016955 ~ 63018688 (+)
G1647411 NA other downstream 581511 63075149 ~ 63077143 (+)
G1647477 NA other downstream 709118 63202756 ~ 63204057 (+)
LOC110498409 LOC106592792 other downstream 897987 63380908 ~ 63414582 (+)
G1648296 NA other downstream 1634570 64128208 ~ 64129068 (+)
G1646569 NA non-coding upstream 150993 62335733 ~ 62336008 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G72073 NA non-coding CI01000012 null 5177582 ~ 5181057 (-)
grasscarp (Ctenopharyngodon idella) G240839 NA non-coding CI01000055 null 3233981 ~ 3234204 (-)
grasscarp (Ctenopharyngodon idella) G312095 NA non-coding CI01000095 null 6055007 ~ 6062719 (+)
mexican tetra (Astyanax mexicanus) srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 misc NC_035921.1 CM008324.1 35018442 ~ 35025598 (+)