sos2 (sos2)


Basic Information

Item Value
gene id sos2
gene name sos2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62276111 ~ 62379517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955323.1
CACGCACTCTGTGTTTACGCAAACTCACTGCCTGTCTACGCAGGACGCAAAGTGAACTGGCCGAGATTCGGGCACCGACGTTGAGTTAAGAGTTGAGGGACGAAACATCTCCAAcgataacaacaacaaaaaacaacacatcAACAAAGCGCTTCTTGTGCCACTGGACACTGGATAAACATGCCTCTGACTTATTCTAAATGGGATTGTTATTGAAGTGCGCGATTTAACCCGATGCGGAAGATATGATGGGGATGATTGTCGAAGTAAACACAGGAGAAAGTTTACTCCTTTTGGAATATGAATGAATAGTCTTGATGCCACAACATAGCTAACTCACAGTGCACCAAGGCCATGATAGACAGCCTTTGCATACAGATGTCTTctctctagctagctagctaggtaatagCGCTAAGCCTAAGTTACAGTAGGCAGTAAGTAACATTATACGTTCAGTCGTGACATTTAATTGAAATGGCTAACTAGCTggctatatgttttttttttgtttttatctaCCAGGCTAACTATCTAAAATAGCAATAGAGTTTGccagttagctaactagctaatcaTTGGTTTATCTAGTTAGCTAGAAACGCTTGAAAGGAAAGCCCGAGTTGGCTAACTAATTAGCTAGCGCACTAGGCGAGCTAACATATCAACTAGCTAGTAAATGAGACCGCTAACGAGTTGCTAGCCTAGCTTAGCCTAGCCTAGCTTAGCACTTTGTCCAATTTGAATCTCAGGTTATCGCTAACTAGTTTATATATGTGCTTTGCACTTCAATTAGCTCGCTAACAGtaagacatgttttttttttctttctagtTAGCATTTCCAAACTTTGCTCGATTTAGTGTACGGTTTAGctagtgttttatatatatatctcttagTTAGCTCAAGCTGCCTTTTCCACCGTGCCTGGACTGACCGACCCGCACCAGGACAAGCCGGGGCCGATGCTGACAGTCCGGATCACGGCAACAGTAAGGAGCCATGCAGCCGCAACAAATATACGACTTTTCAAGTGACGAGAACAGTCACAAATGGCGAGGCCTCTTCGTCCAAGCGTTGCGAAAGgtgCAGCTGCAGGTGCACCCCAACCTGTCAGCCACAGAGGGCGCTCTGCAGCACATCGAAGAGCTCATCCTGCAGCTGCTCAACATGCTGTGTGTGGCCCAGCCGCGCTCTGTACAGGACGTGGAGGAGCGGGTCCAGAAGACTTTCCCCCACCCCATAGATAAATGGGCCATAGCTGACGCCCAGTCAGCCAtcgagaagaggaagaggaggaacccCCTACTGCTCCCTGTGGATAAGATACACCCTCTACTCAAGGAGGTGCTGGGTTATAAGATAGACTACCACGTCTGCCTCTACATCGTGGCGGTTCTAGAGTACATATCAGCTGACATCCTGAAGCTAGCAGGAAACTACGTTGGTAACATCAGACACTATGAGATCAGCCAGCAAGACATCAAGGTGTCCATGTGTGCAGACAAGGTCCTAATGGACATGTTTGACCAGGACGAGGACATCGGTCTGGTGTCTCAGTGTACGGAGGAGCCTTCGTCGTCGGGGGAGCTGACCTACGACGACCTGGTGCGCCTGGAGATTGCAGAGGAGCGCCAGTACCTGCGGGAGCTCGACCTCATCATCAAGGTGTTCCGACATCACTTCCTGTTCAACAACAAGATCTTTACGCCTCAGGATGTGGAGGTGATTTTCAGTAACATCTTGGACATCCATGAGTTGACGGTCAAGCTGCTGGGCCTGATCGAAGATGCAGTGGAGATGACCGCTGACGGTAGTCCACATCCTCTGGTGGGCAGCTGCTTCGAGGACCTGGCAGAGGAGCAGGCGTTTGACCCATACGAGACCCTGTCTCAGGACATCCTGTCCAGGCAGTTCCACGAGCacttcagcagtctgatggcccggcctactgtaggactatacTTCCAGtccaTAGCTGAAGGTTTCAAGGAGGCGGTTCAGTACGTCCTGCCACAGCTCATGATGGTTCCTGTATACCACTGTTTGCACTACTTTGAACTACTGCAGCAGCTGCAGGAGCACAGTGAGGAGCAGGACGACAGGGAGTGTCTGAAGCAGGCCATCACCGCTCTGCTCAACCTCCAGTGTAGCGTGGAACGCATCTACACCAAACACCTGCCCCGACGCAAGCCTGGCGAGCCCAAGTACCGTCTGTACAGTCGTCAGGTGCGCAGCAAGCAGCTGGCCATCAAGAGGATGAACGAGATCCAGAAGAGCATCGACGGCTGGGAGGGGAAGGACATCGGCCAGTGCTGTTCCGAGTTCATCCTGGAGGGGGCGCTCCTCCGCGCCGGCGCCAAACACGAGCGACACAACTTCCTGTTCGACGGCCTCATGATCAGCTGCAAGGCCAATCAGAGCTCCCGACTCCCCGGTTCCGGAAGCGGGGCCGAGTTCCGTCTCAAGGAGAAGTTCGTCCTGCGGAAAGTCCGCATCGTGGACCGCGAGGACTCGGCGGAGTTCAAACACGCCTTCGAACTCGTCGGTAAAGACGAGAACTGTGTGGTGTTCTGCGCCCGCTCGGCGGAGGACAAGGGGGCGTGGATGGCGGCGCTGGTCACCCTGCAGTACCGCTCCACGCTGGACCGTATGTTGGACACGGTTCTGCAGCACGAGGAGCAGGCCcagcccctccgcctgccctcgCCAGAGCTATACCGCTTCGCTGTGCACGACTCGGAGGAGAACATCGTGTTTGAAGATCGCGTCCAGAGCAAGACGGGGATACCCATTATTAAAGCAGGCACGGTGGTCAAGCTTATAGAGAGGCTCACCTACCACATGTATGCTGATCCCAACTTTGTGCGCACTTTTCTGACCACCTACCGGTCCTTCTGCAAGCCCCACGAGCTCCTCGGCCTCCTGATAGACAGGATTGAGATCCCAGAGCCGGAGCCCACCGAAGCAGACAAGCAGGCGCTATGGAACGGAGATCAGCCAATGGCTGCAGAGCTACAGAGGTTCCGGAGGGAGTACGTCCAACCGGTCCAACTCAGggtcctGAATGTGTTTCGTCAGTGGGTGGAACATCATTTCTATGACTTTGAGAACGACCCCGAGCTACGAGGCAGACTGGAGGAGTACATCAGCAGCATTCTACAGCTACGAGGAAAGTCTATGAGGAAGTGGGTGGAGTCTATCAACAAGATCATCAAGAGGAAGATGCAGACTCAGTCCAACGGGGTCAGCCACAACATCACCTTCGAGAGCCCGCCCCCGCCCATCGAGTGGCACATCAGCCGCCTGGGTCAGACGGACACCTTTGACCTCATGACCCTTCACCCCATAGAGATCGCCCGTCAGCTCACCCTGTTGGAGTCAGAGCTATACAGGGCTGTGAGGCCATCTGAGCTGGTGGGGAGTGTCTGGACCAAAGAGGACAAGGAGAATAACTCTCCCAACCTACTGAGAATGATCCGCCACACCACCAACCTTACACTGTGGTTTGAGAAgtgTATTGTGGAAGCAGAGAACCTGGATGAGAGGGTAGCAGTGTTCACCCGGGTCATTGAGATTCTCCAGGTGTTTCAGGAGCTCAACAATTTCAACGGTGTTCTGGAGGTGGTCTCCGCCATCAACTCTGTCCCTGTCTACCGGCTCGATCACACCTTTGAGGCGGTCCccgagaggaagaagaggatccTAGAGGAAGCAGTGGAACTGAGCCAGGACCATTTCAAGAAGTACCTGGCCAAGCTCAAGTCCATTAACCCTCCCTGCGTGCCTTTCTTTGGTATCTACCTGACCAACATCCTgaagacagaggaggggaacccCGACTTCCTGAAGAGACACGGCAAAGAGCTGATCAACTTCAGTAAGAGGAGGAAAGTAGCAGAAATCACAGGAGAGATACAGCAGTACCAGaaccagccgtactgtctcaagGTGCAGCAAGACATCAAGAGGTTTTTTGAGAACCTGAACCCGATGGGCTGTCTGGGTGAGAAGGAGTTCTCTGACTATCTGTTCAACAAGTCTCAGGAGATTGAGCCTCGCAACTGCAAGCAGCCGCCACGATTCCCCAGGAAGACCCTGTACCCCCTGAAGTCCCCGGGGATCCGGCCGGTGCGCACCTCTACGTCAGGGACCCTGAAgggccaccctgtacccctggaGAGAGAGCCCCCGCACAAGATCACCTTCAGGAGCATCGCTGAGACGGAGCATGAGACCTCTTCCGTAGCCTCGGTCCCCACCTCACCCAACACCCCCACCCCTCCGCAGTCGGCCACCTCAGACCTCATCTCTGTCTTCATGGAGCAAGACCTCTGCAACTCCTACGGTGGAAACTCCATATTCGCTAATGTACTCCTCCCACCCTCAAAGGTCCAGTCAGTATCGTGTGGAAGCCTTCACCAGCTAGGAGAGGACTTACTCAAACCCCCTCCACTTCCCCCGCGCAGGAAGGATGCTTTCTCTGAGACCAagTTGAGTTCCAGGTCTGACAGTCCTCCAGCCATCCCGCCCAGgctgccccctcctctccccaggatCCAGCCCCGCGCCCCGGTCTACAATGGCCCCAGCGACGGCCCCCTCTCcagccccccaccaccacctccccgGGACCCCCAGCCAGACACCCCTCCACCCGTCCCCCAGAGACCCCCAGAGATCTTCATCAACTACCCCCTGAACCTTCAACCTTCCCCTGTCGGACGCTTCCACTGGGACTTTGGCAGCTCCCCTTCATCCCCCGGCACACCCCCGGGCACCCCCTCTCCCCGCGTCCCCCGACGGAGCTGCCCCCTCAGCGCTAGTCAGAACAGTCTCTGCCCTCTCCCGCTGCCCATCATGGCGCCCCCTGTGCCACCTCGCCACAACTCCAACTCCTCCCCCCAGCTCCCCAAACTCCCCCCAAAGACCTACAAGAGGGAGCTGTTGCCGCCCCCGTTACAGAGCCTCTCATTGGTGGAGAACACGGACACTAGCCAATGAGGAGCCTTCTGCTTCTTTTGTTATTGTTTTCGTTGTCAACATGGAAGCCTTTGAGTTTCTCCACACAATACAAACTGCAAACAAACTATGTCCTACATTAAACTATGAACTAATGACCTGCATCAGACTATGAACTATGACCTATGACCTAGAGCGGatgaaaacaaacaaactaaTCATGATTTTAAAGCTACTGATCGTAAAGAAGACTTCGTTTCCAACCACACTCCAAACCACGCCCACTTCATCTCCTGCCACGCCTCTCAGGAATCAGTAGCTCCGCCTTCATGCCAATTGAAAATACACCACAGTGTGCCAGCCAATGAACAAGTAGCCTCAAGATTCTAACTCCtcctctctgtgggtgtgtgtgtgtgtgtgtacgttggtgtgtgtgtgtgcgcgtttcaCATACCTGTACACAGCACAGCACATGTCAGTGCGTTTCTTTCTTGGTACAGACGTCCCACTCTGTGCTAgagtggacaggacaggacaggacagcaagCTATGCTCTGGTAGTTGCCCTTCTCCTACCCtgacagttaaaaaaaaaacgtttttaccCCGGGTTCTCCAGCCTGTCCTGGTCCAGTTCGGTAGCCCCATGCCCCATGTGTTTGTGATTCCGTTGTTCCATTGGCACACTGTAGTGCTAGGAGCAGCATTCACTCACTTACCcaggagtcagtcagtcagtcctgtcCTGTGGCTCGCAGACTTGACAGTCACTGGACCTATTCGGACTTCACTGCTCTTTAATGATCAAAACTTATCAATTGCTCTTCCCGCGGTTCTGTACCGCGGTTCTGTCTGGAGATATCCTCTGAGGCCTCTCAACTCTTCCCATTTGTGTTCTGTCGTTCTCTAATAATCTCTAACTTTTGTAGCCAACGTTTCATTTGATGCAGGGTGAAAACTTAAGggatacattttatttttgaggAATGATAAGACCAACTAAAAAAAAATGGGATGCAAAttgtatttcattcattcagaactgactgactgaaagCGTTCAGGAAAAAGGTGTGCGACTATTGaataaacacccccccccccccatcccccccccccttggtCGTAGCTACACCCTCTACTTCAGATGTTAGCCTTTAATCCCACAGCACTGACCTCTAACCTGAGGCCAGGGGAGCCATtcagaatgagggagagagaccgaCGGATGGACATATCGGAAGACAGATTGGCGGagagtgtagtgtagggtaggatCCACTTTTAACTGGGGCAGGGCAGCAGTGACGTCTACTCGTCTACCCTCGTCAGTCATGTGATGGGAGAAGTCTGTTTGTGTCTGGACTATAGAAAacgatagaggcctctagtggccaaaaggctatattagcatgggcagcgccattgagggcttccaccgtGCTTccgccattttaaagtagtcaaggtggacaactgggtggggattcctgtGAGTTgttgcctcaatggcgctgcccatgctgtcacagatgctACAATGGCACTGATATAAATGAGTCCTCTGTCTCTATGGAGCTGCCTATGCTGTCACAGTGCTGATATAAATATGAGTCCTCTATCGATCTCTATggagctgcccatgctgtcacagtgCTGATATAAATATGAGTCCTCGATCTATCTCTATggagctgcccatgctgtcacagatgctataatGGAGCGGATATaaatgagtcctctatctatctctatggagctgcccatgctgtcacagacgctatAATGGCGCGGATATAAATGAGTCCTCGATCTATCTCTATggagctgcccatgctgtcacagacgctatAATGGCGCGGATATAAATGAGTCCTCGATCTATCTCTATGGAGCTGCCCATGCTGTGACAGATGCTATAATGGCGTGGATATaaatgagtcctctatctatctctatggagcTGCCCATGCTGTGACAGGTGCTATAATGGCACTGATATaaatgagtcctctatctatctctatggagctgcccatgctgtcacagtgCTGATATaaatgagtcctctatctatctcttatGTCTGCACAAAGCCCAGATCTCGGGAAGAAGAGTAGGATGAGTGACAACAACATTGAGATATCTCATTCTCGGGCCAGGGAGGCGGTAACTATAGCAGCCAGACATTTCTTTCTCCGTCTCCTTGAAgtgatactttgggattttgccAGTGtaacttccccagagtcagatgatctTGTGTATACCATTGTTACATCTCTGTGTCCAGCGTGAAGGAGGTTTAGAGGTAGTTTCTTGAGCCAgcgctaactagcgttagcgcccATGACTGGAAGTTTATGGGTATCTACTAGCACGTTCCTTTTAAAGCTAGcccggtcccagatctgtttggccTTTTGGCCTACTCTGTTCTCTTATGGCTATTTGTCATGTTGATTCCATATGGCGTGGGCAAGAACAGACCTATAGCCAGGCTAGCTGAAAGCCAAGATGATGTCTTAACCCAAACTAAGTGCCCCTAAAAGTTGtatgctgctgtctgtctgtccagaacTATCTGCAGCTCTACTACCATCATACCCAGTACTGTACCAGCCTGCAGTGTTGGTATGGAAATTCAGCACTGGACTCCTCATACGCAGCAACCCCAACAAAGCCTGGAACAAATGGACAGTTGGCTCCTCTAGTGGACAAATTGGGGATTGCTCCACAGCTCCCCTAGTGGATAGGAGGACAAACAGCTCCTCTAGTGGACAAACTGGGGACTGCTCCACAGCTCCCCTAGTGGATAGGAGGACAAACAGCTCCTCTAGTGGACAAACTGGGGACTGCTCCACAGTGCCCCTAGTGGATAGGACAAACAGCTCCTCTAGTGGACAAACTGGGGACTGCTCCACAGCGCCCCTAGTGGATAGGAGGACAAACTGGGGACTGCTCCACAGCGCCCCTAGTGGATAGGAGGACAAACAGCTCCCCGAGTGGACAAACTGGGAACAAGTGGCTGTTTCAGATATCTGGATTCACATCGAGAAGAAGCCTCTATTAACCAGATGtcactgtcctcctctctctctctctctctctctctcctctcaaataTGCCATTTCATTTTAAAATACTGAAATAACATGCATCATGCTCAGATGTGCCTTTTTTTGATTTTGTTTTCTTTACAGAGTAAGCGAAAGGTGTCTTTTTTTAAATGCTATTAAAAAAACTGATATGATAAATAAA
>TU1883777
CGGGCACCGACGTTGAGTTAAGAGTTGAGGGACGAAACATCTCCAAcgataacaacaacaaaaaacaacacatcAACAAAGCGCTTCTTGTGCCACTGGACACTGGATAAACATGCCTCTGACTTATTCTAAATGGGATTGTTATTGAAGTGCGCGATTTAACCCGATGCGGAAGATATGATGGGGATGATTGTCGAAGTAAACACAGGAGAAAGTTTACTCCTTTTGGAATATGAATGAATAGTCTTGATGCCACAACATAGCTAACTCACAGTG

Function

symbol description
sos2 Predicted to enable DNA binding activity; guanyl-nucleotide exchange factor activity; and protein heterodimerization activity. Acts upstream of or within pronephros development. Human ortholog(s) of this gene implicated in Noonan syndrome 9. Orthologous to human SOS2 (SOS Ras/Rho guanine nucleotide exchange factor 2).

NR:

description
PREDICTED: son of sevenless homolog 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955323.1 False 8233 mRNA 0.52 23 62276111 62379517
TU1883777 True 276 lncRNA 0.42 1 62276179 62276454

Neighbor

gene id symbol gene type direction distance location
l2hgdh l2hgdh coding upstream 2747 62248727 ~ 62273364 (+)
cdkl1 cdkl1 coding upstream 31830 62217103 ~ 62244281 (+)
map4k5 LOC106611444 coding upstream 65658 62095441 ~ 62210453 (+)
sav1 sav1 coding upstream 237218 62020594 ~ 62038893 (+)
nin LOC106611458 coding upstream 266810 61924326 ~ 62009301 (+)
cdkn3 cdkn3 coding downstream 39839 62419356 ~ 62422349 (+)
lgals3a NA coding downstream 63626 62414368 ~ 62446035 (+)
LOC118941522 LOC106591813 coding downstream 75600 62455117 ~ 62460307 (+)
LOC110504280 LOC106602928 coding downstream 86737 62466254 ~ 62485447 (+)
srsf5a LOC106611464 coding downstream 107404 62486921 ~ 62493719 (+)
G1646511 NA non-coding upstream 118452 62157339 ~ 62157659 (+)
G1646510 NA non-coding upstream 118868 62148751 ~ 62157243 (+)
G1646491 NA non-coding upstream 185550 62090347 ~ 62090561 (+)
G1646489 NA non-coding upstream 186629 62089162 ~ 62089482 (+)
G1646486 NA non-coding upstream 191770 62083184 ~ 62084341 (+)
G1646607 NA non-coding downstream 69291 62448808 ~ 62449040 (+)
G1646642 NA non-coding downstream 163627 62543144 ~ 62543659 (+)
G1646649 NA non-coding downstream 180689 62560206 ~ 62560803 (+)
G1646650 NA non-coding downstream 182249 62561766 ~ 62562776 (+)
G1646509 NA other upstream 130821 62144183 ~ 62145290 (+)
G1646294 NA other upstream 715027 61558041 ~ 61561084 (+)
G1646225 NA other upstream 930957 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 984270 61242422 ~ 61308910 (+)
G1646089 NA other upstream 1072759 61200860 ~ 61203352 (+)
G1647342 NA other downstream 637438 63016955 ~ 63018688 (+)
G1647411 NA other downstream 695632 63075149 ~ 63077143 (+)
G1647477 NA other downstream 823239 63202756 ~ 63204057 (+)
LOC110498409 LOC106592792 other downstream 1012108 63380908 ~ 63414582 (+)
G1646543 NA non-coding downstream 5327 62281781 ~ 62282159 (+)
G1646547 NA non-coding downstream 10381 62286835 ~ 62287087 (+)
G1646548 NA non-coding downstream 11163 62287617 ~ 62287988 (+)
G1646551 NA non-coding downstream 15838 62292292 ~ 62292507 (+)
G1646552 NA non-coding downstream 16089 62292543 ~ 62292846 (+)

Expression


Co-expression Network