Gene
RNA
| Item | Value |
|---|---|
| gene id | G1646510 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 62148751 ~ 62157243 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1883838 | False | 441 | lncRNA | 0.41 | 2 | 62148751 | 62157243 |
| TU1883839 | True | 546 | lncRNA | 0.40 | 2 | 62149956 | 62157243 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sav1 | sav1 | coding | upstream | 109858 | 62020594 ~ 62038893 (+) |
| nin | LOC106611458 | coding | upstream | 139450 | 61924326 ~ 62009301 (+) |
| pygl | LOC106611459 | coding | upstream | 250086 | 61863637 ~ 61899051 (+) |
| LOC118941521 | NA | coding | upstream | 266418 | 61881330 ~ 61882333 (+) |
| trim9 | trim9 | coding | upstream | 295870 | 61746138 ~ 61852881 (+) |
| cdkl1 | cdkl1 | coding | downstream | 59860 | 62217103 ~ 62244281 (+) |
| l2hgdh | l2hgdh | coding | downstream | 91484 | 62248727 ~ 62273364 (+) |
| sos2 | sos2 | coding | downstream | 118868 | 62276111 ~ 62379517 (+) |
| cdkn3 | cdkn3 | coding | downstream | 262113 | 62419356 ~ 62422349 (+) |
| lgals3a | NA | coding | downstream | 285900 | 62414368 ~ 62446035 (+) |
| G1646491 | NA | non-coding | upstream | 58190 | 62090347 ~ 62090561 (+) |
| G1646489 | NA | non-coding | upstream | 59269 | 62089162 ~ 62089482 (+) |
| G1646486 | NA | non-coding | upstream | 64410 | 62083184 ~ 62084341 (+) |
| G1646485 | NA | non-coding | upstream | 71037 | 62077257 ~ 62077714 (+) |
| G1646476 | NA | non-coding | upstream | 92155 | 62042859 ~ 62056596 (+) |
| G1646511 | NA | non-coding | downstream | 96 | 62157339 ~ 62157659 (+) |
| G1646543 | NA | non-coding | downstream | 124538 | 62281781 ~ 62282159 (+) |
| G1646547 | NA | non-coding | downstream | 129592 | 62286835 ~ 62287087 (+) |
| G1646548 | NA | non-coding | downstream | 130374 | 62287617 ~ 62287988 (+) |
| G1646509 | NA | other | upstream | 3461 | 62144183 ~ 62145290 (+) |
| G1646294 | NA | other | upstream | 587667 | 61558041 ~ 61561084 (+) |
| G1646225 | NA | other | upstream | 803597 | 61344787 ~ 61345154 (+) |
| LOC110498404 | LOC105025554 | other | upstream | 856910 | 61242422 ~ 61308910 (+) |
| G1646089 | NA | other | upstream | 945399 | 61200860 ~ 61203352 (+) |
| srsf5a | LOC106611464 | other | downstream | 329758 | 62486921 ~ 62493719 (+) |
| G1647342 | NA | other | downstream | 859712 | 63016955 ~ 63018688 (+) |
| G1647411 | NA | other | downstream | 917906 | 63075149 ~ 63077143 (+) |
| G1647477 | NA | other | downstream | 1045513 | 63202756 ~ 63204057 (+) |
| LOC110498409 | LOC106592792 | other | downstream | 1234382 | 63380908 ~ 63414582 (+) |
