cdkn3 (cdkn3)


Basic Information

Item Value
gene id cdkn3
gene name cdkn3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62419356 ~ 62422349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574895.2
GCGTGGACGAGTCGAGCCTGGATCTGATTGGCTGGTTTGGACACtcggtgttttttttaaatcgtaGCTGACAAGCGTTCATGAACTCTGTCAAAATTTGTACAAAAAAAAACGTCAATTCATTGTGTATTTGCCAGAAACAATGAGGACCACCAGTGAGTTTGATTCATCCTCGGATGAAGAGGAAGTTTGTGAAGAGCATCTGACACCTTTCCAGATCTCCTGGTTGCCCTTGTCCATAGTGGACTGTTCTCTGTTTCTTGGAATATGTCCTTTGCCAGGGTGCAAATTCAAAGATATCAGAAGAAATTTACTGAGAGATGTTGGTGAGCTGCAGAACCAGGGGGTGCAGGATGTGTTTGTGTTCTGTACCAGAGGAGAGCTCCATAAGTACCGTGTGCCTAGCCTGCTGGAGACCTACAGGCAGCAGGGGCTCGTGGTGCACCACCTGCCCTTCCCTGATGGGGGCACCCCTGATCTGCAGCAGTGCTGCCAGATACTGGAGGGACTGCAAGCCAACCTACACAACAACCGGAAGACTGTCATCCATTGTTATGGAGGCCTGGGTCGCTCTGGACTAATTGCTGCCTGTCTGCTGCTTCAACTGTCCGTCTCCATGACTCCCAACAAAGCCATCGAGATCCTAAGAGAGCACAGAGGGGGTGGGGCCATTCAGACAGTCAAGCAATACAACTTCCTGCATGAGTTCCGGGAAAAATACTCTGCCTACCAAGAAACCAAGGCAGTCTCAACAGAGCGATCGGTGTCGCGGTGATACCATTCCCCTTCAACTGAACTCTGTCCTTTTTTAAATTAATTGGGAGTAATAAAAGCATTGAATATTAACCGCTCTCAAGAAGATGGTTTGACATGATTGTATGTGTTCTCTTAAAgcacttttttttaaaaagaatGTTTGTTTTTAAAGCCCTATTGTTCTTAAACTAAAAGTTTAAGAGATTATCGTGTTGccgtgctctgatatctgctttaCATTATGAAATAACTATTTGAATCCCAATACAGTGGCTTCTATTACGTGGGACTGTTGTCTGAGGCGTGAGCTCCATGTTTGTACAGCATAATGGTAGATCAGCTCTGTCCATTGAGCCAGGAAATTAAACCAATCTGGTGCACATCAGTGTAGGTTTATTTGGAGTCTAGTTGTGATTTTGGGTCTAGATTCAATCTGTACTGTGGAAAATCCGCTTTAAAGACTatttcccccccctccccccgatTGGGCCGATTCTATGCAGCACTTACCATGAATGTGTTCTCAGAACATTGCCTTGAAAATGTGTTCAGATTTTAATATTTTCCTTGGTGAAATTAGCTTCTCTAGTGTGAAGAAACAATTTACTTCCTGATGACTTTACAGGTTGGATAAAAAGTCAATTACAGAAGACATTGGGATAAATATTCTTTATCTTTTTAGAAAGTAGTCAAATTCCTGCAAATGGAAATCAAATCAAGACAACCTGATTAAAAATCCTGAAATTGTCACAATGTAATAGGAGTGTGAAACTTGGCAAAAGACACAttctcaaataaataaaaattgatattttttttggta

Function

symbol description
cdkn3 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm. Is expressed in myotome and somite. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CDKN3 (cyclin dependent kinase inhibitor 3).

NR:

description
cyclin-dependent kinase inhibitor 3

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14167 CDKN3, KAP; cyclin-dependent kinase inhibitor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574895.2 True 1579 mRNA 0.42 7 62419356 62422349

Neighbor

gene id symbol gene type direction distance location
sos2 sos2 coding upstream 39839 62276111 ~ 62379517 (+)
l2hgdh l2hgdh coding upstream 145992 62248727 ~ 62273364 (+)
cdkl1 cdkl1 coding upstream 175075 62217103 ~ 62244281 (+)
map4k5 LOC106611444 coding upstream 208903 62095441 ~ 62210453 (+)
sav1 sav1 coding upstream 380463 62020594 ~ 62038893 (+)
lgals3a NA coding downstream 20794 62414368 ~ 62446035 (+)
LOC118941522 LOC106591813 coding downstream 32768 62455117 ~ 62460307 (+)
LOC110504280 LOC106602928 coding downstream 43905 62466254 ~ 62485447 (+)
srsf5a LOC106611464 coding downstream 64572 62486921 ~ 62493719 (+)
LOC110504279 LOC106599953 coding downstream 77727 62500076 ~ 62602774 (+)
G1646573 NA non-coding upstream 21367 62342250 ~ 62397989 (+)
G1646564 NA non-coding upstream 63805 62328750 ~ 62355551 (+)
G1646569 NA non-coding upstream 83348 62335733 ~ 62336008 (+)
G1646560 NA non-coding upstream 109632 62309441 ~ 62309724 (+)
G1646558 NA non-coding upstream 114182 62304931 ~ 62305174 (+)
G1646607 NA non-coding downstream 26459 62448808 ~ 62449040 (+)
G1646642 NA non-coding downstream 120795 62543144 ~ 62543659 (+)
G1646649 NA non-coding downstream 137857 62560206 ~ 62560803 (+)
G1646650 NA non-coding downstream 139417 62561766 ~ 62562776 (+)
G1646446 NA non-coding downstream 180593 62602942 ~ 62603952 (+)
G1646509 NA other upstream 274066 62144183 ~ 62145290 (+)
G1646294 NA other upstream 858272 61558041 ~ 61561084 (+)
G1646225 NA other upstream 1074202 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 1127515 61242422 ~ 61308910 (+)
G1646089 NA other upstream 1216004 61200860 ~ 61203352 (+)
G1647342 NA other downstream 594606 63016955 ~ 63018688 (+)
G1647411 NA other downstream 652800 63075149 ~ 63077143 (+)
G1647477 NA other downstream 780407 63202756 ~ 63204057 (+)
LOC110498409 LOC106592792 other downstream 969276 63380908 ~ 63414582 (+)

Expression


Co-expression Network