cdkl1 (cdkl1)


Basic Information

Item Value
gene id cdkl1
gene name cdkl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62217103 ~ 62244281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955321.1
GGCTGTGTGTGAGGGGGTGGAGTCTGGTCCTAGGGGACCAGGCTGAAGAAGGGGTGGAGTCTGTTCCTATGGGGACCAGGCTGAAAGCGAAAgccttctgagagagagagagcagctcgACCTACAGTTCCAACAACGTGTCCATCTCCGTTTCTCCTCAGTCGATGTATGCCAGGCGTTCTCTCCGCTCTGAGTGTCTTATTTGGCAATACTGTACATCCAAACGACACCTGAACATCTCAAGTCAAAGGCCATCCCATAAGGCATTTCTTGAACCAAAACGACTACGACCACTCCCAGTCAGTCCTCAGACATCACCATGGAGAAGTATGAGAAGATGGGGAAGATCGGGGAGGGGTCCTACGGTGTGGTGTTCAAGTGCAGGAACAGGGACACGGGACAGATCGTTGCCATCAAGAAGTTTGTGGAGTCTGAAGACGATCCCGTCATTAAGAGGATCGCTCTGAGAGAGATTAGGATGCTGAAGCAACTAAAGCACTCCAACCTTGTGAACCTGATTGAGGTGTTCAGGCGTAAACGTAAACTACACCTGGTGTTTGAGTACTGTGATCACACTGTCCTCAACGAGCTGGACCGATACCCCAGAGGTGTTCCAGAACATCTGGTAAAAAGCATCACCTGGCAGACACTCCAGGCTGTCAACTTCTGTCATAAACAGAACTGCATCCACAGAGACGTGAAGCCCGAGAatatcctcattactaaacaGCAGGTCATTAAGCTCTGTGACTTCGGATTCGCCAGGATCCTCACCGGTCCATGTGACTACTACACAGACTATGTGGCAACGCGATGGTACCGGGCCCCTGAGCTGCTAGTGGGTGATACTCAGTATGGAGCCCCTGTTGATGTCTGGGCGCTGGGCTGTGTCTTCTCTGAGCTGCTCTCTGGCATCCCCCTCTGGCCCGGCAAGTCAGACATGGATCAGCTCTACCTCATCAGGAAGACACTGGgaGACCTGATCCCCCGCCACCAGCAGGTATTCAGTAAGAACCAGTTCTTCAGTGGAGTCTGCATCCCAGAGCCTCAGGAAATGGAATCTCTGGAACTGAAATACCCCAACCTGTCATATCAAGCACTGAGTCTGATGAAGGGCTGCCTGCGTATGGACCCGTCGGAGCGGCTGGCCTGTGAGCAGCTTCTGGAGCACCCGTACTTCGACAGCCAAcgggaggagagcgagagcacCGACCGCTCCACCAAGAAGAGGTCACGCCTCCTGCCCCGCAAACACCTCCCACCTGGGATCTGTAAGGTGGAACTTGGAAGCAATAAGGTGGAAGCTTCATGCAAATTGGGACCAGCTGTCAGAGATGGCAAAATGCTGTACAAACAATTGAAGtATTTGCCTCAGCTCACCAGCAGCAGTATCTTCCCAGCTCTGGACAACAAGAAGTACTATACCAACCTGAGGAAATTCAACTACCACTTCCCTAACATTTAAACCAAACAGTTTAGATCTGAAGGGTCCAGTCGCACATTCATCAACATTTACCGTGTTCACGGTGCTAGTTAGAACTGAAATGTCCAACTTGCTGTAGTTCTAGACGTGTCGCGGGGCATTTCTGaatttcctagttccgactagcacgtgaACACGGCAATATTCTGGTCAGCTCAGGAACCAGGAAGTGAATCACAACGTGGAAGGACCAGGGAGAAGTCCTTGTgtcttgtgatgtcattctaTGCACTATGTAAACTTTTTTTTCTGAAAGACAATTTTATTATGTGGTGTTGCCTCCATTGAAGGCGTATTTTGTACATCTATATAATGACAAGGAGCAGCCTAGTGCTCAGCTGGTAGATTGAGGTCGTCTTTCAGGCAGACTACGTTGCATGTTGTCACGTCAATCGACTGTGCCGGTCGGGCAccagattgctgctataacatatGTGGTTGATCTGATAGGGAAAATACCTATCCCAGACATTGTGAGATCTGGCATGCGTCTGCAGCGTAGTCAACCTGGGAACACAGACAGATACTTGTGTAGAACAGAGGGAGTACCATAGCCTACTGCCTTGACTGGTTTTGCCAAATGTTATTTgtttgtgtttaaaaaaataaataatgagcGAGACAGTTGACATTTTTTTGGTAgtgaattgatttgcattttgtTAAAAATATTGATTGATTTTCTCAGAAGTAGCTTTGAGTCATTTGTAAAGAGGAGAAATGTAACAGAAGGTGAAAGGTCAGCTCTGCTTTATTTTATCGGACAGAAATTGTTCATAAGCAATTGTCTGAAATGATCAGATCAGCCTCAACGTAGCTGTGGATTGAATACAGTAAGGGTTCTATTCAGTCTGGATCTCTGAAGAGATGTGCACTGAACAGGAATAAACATGTCAAGTGttcgtcccatgtttcatgagctgaaataaaagataccagaaatgttccatacgcacagaaagcttatttctctca
>XM_036955322.1
GGAGTCTGGTCCTAGGGGACCAGGCTGAAGAAGGGGTGGAGTCTGTTCCTATGGGGACCAGGCTGAAAGCGAAAgccttctgagagagagagagcagctcgACCTACAGTTCCAACAACGTGTCCATCTCCGTTTCTCCTCAGTCGATGTATGCCAGGCGTTCTCTCCGCTCTGAGTGTCTTATTTGGCAATACTGTACATCCAAACGACACCTGAACATCTCAAGTCAAAGGCCATCCCATAAGGCATTTCTTGAACCAAAACGACTACGACCACTCCCAGTCAGTCCTCAGACATCACCATGGAGAAGTATGAGAAGATGGGGAAGATCGGGGAGGGGTCCTACGGTGTGGTGTTCAAGTGCAGGAACAGGGACACGGGACAGATCGTTGCCATCAAGAAGTTTGTGGAGTCTGAAGACGATCCCGTCATTAAGAGGATCGCTCTGAGAGAGATTAGGATGCTGAAGCAACTAAAGCACTCCAACCTTGTGAACCTGATTGAGGTGTTCAGGCGTAAACGTAAACTACACCTGGTGTTTGAGTACTGTGATCACACTGTCCTCAACGAGCTGGACCGATACCCCAGAGGTGTTCCAGAACATCTGGTAAAAAGCATCACCTGGCAGACACTCCAGGCTGTCAACTTCTGTCATAAACAGAACTGCATCCACAGAGACGTGAAGCCCGAGAatatcctcattactaaacaGCAGGTCATTAAGCTCTGTGACTTCGGATTCGCCAGGATCCTCACCGGTCCATGTGACTACTACACAGACTATGTGGCAACGCGATGGTACCGGGCCCCTGAGCTGCTAGTGGGTGATACTCAGTATGGAGCCCCTGTTGATGTCTGGGCGCTGGGCTGTGTCTTCTCTGAGCTGCTCTCTGGCATCCCCCTCTGGCCCGGCAAGTCAGACATGGATCAGCTCTACCTCATCAGGAAGACACTGGgaGACCTGATCCCCCGCCACCAGCAGGTATTCAGTAAGAACCAGTTCTTCAGTGGAGTCTGCATCCCAGAGCCTCAGGAAATGGAATCTCTGGAACTGAAATACCCCAACCTGTCATATCAAGCACTGAGTCTGATGAAGGGCTGCCTGCGTATGGACCCGTCGGAGCGGCTGGCCTGTGAGCAGCTTCTGGAGCACCCGTACTTCGACAGCCAAcgggaggagagcgagagcacCGACCGCTCCACCAAGAAGAGGTCACGCCTCCTGCCCCGCAAACACCTCCCACCTGGGtATTTGCCTCAGCTCACCAGCAGCAGTATCTTCCCAGCTCTGGACAACAAGAAGTACTATACCAACCTGAGGAAATTCAACTACCACTTCCCTAACATTTAAACCAAACAGTTTAGATCTGAAGGGTCCAGTCGCACATTCATCAACATTTACCGTGTTCACGGTGCTAGTTAGAACTGAAATGTCCAACTTGCTGTAGTTCTAGACGTGTCGCGGGGCATTTCTGaatttcctagttccgactagcacgtgaACACGGCAATATTCTGGTCAGCTCAGGAACCAGGAAGTGAATCACAACGTGGAAGGACCAGGGAGAAGTCCTTGTgtcttgtgatgtcattctaTGCACTATGTAAACTTTTTTTTCTGAAAGACAATTTTATTATGTGGTGTTGCCTCCATTGAAGGCGTATTTTGTACATCTATATAATGACAAGGAGCAGCCTAGTGCTCAGCTGGTAGATTGAGGTCGTCTTTCAGGCAGACTACGTTGCATGTTGTCACGTCAATCGACTGTGCCGGTCGGGCAccagattgctgctataacatatGTGGTTGATCTGATAGGGAAAATACCTATCCCAGACATTGTGAGATCTGGCATGCGTCTGCAGCGTAGTCAACCTGGGAACACAGACAGATACTTGTGTAGAACAGAGGGAGTACCATAGCCTACTGCCTTGACTGGTTTTGCCAAATGTTATTTgtttgtgtttaaaaaaataaataatgagcGAGACAGTTGACATTTTTTTGGTAgtgaattgatttgcattttgtTAAAAATATTGATTGATTTTCTCAGAAGTAGCTTTGAGTCATTTGTAAAGAGGAGAAATGTAACAGAAGGTGAAAGGTCAGCTCTGCTTTATTTTATCGGACAGAAATTGTTCATAAGCAATTGTCTGAAATGATCAGATCAGCCTCAACGTAGCTGTGGATTGAATACAGTAAGGGTTCTATTCAGTCTGGATCTCTGAAGAGATGTGCACTGAACAGGAATAAACATGTCAAGTGttcgtcccatgtttcatgagctgaaataaaagataccagaaatgttccatacgcacagaaagcttatttctct

Function

symbol description
cdkl1 Enables protein kinase activity. Acts upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hypochord; nervous system; pleuroperitoneal region; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CDKL1 (cyclin dependent kinase like 1).

NR:

description
cyclin-dependent kinase-like 1 isoform X2

GO: NA

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955321.1 False 2458 mRNA 0.48 11 62217103 62244281
XM_036955322.1 True 2342 mRNA 0.48 10 62217121 62244279

Neighbor

gene id symbol gene type direction distance location
map4k5 LOC106611444 coding upstream 6650 62095441 ~ 62210453 (+)
sav1 sav1 coding upstream 178210 62020594 ~ 62038893 (+)
nin LOC106611458 coding upstream 207802 61924326 ~ 62009301 (+)
pygl LOC106611459 coding upstream 318438 61863637 ~ 61899051 (+)
LOC118941521 NA coding upstream 334770 61881330 ~ 61882333 (+)
l2hgdh l2hgdh coding downstream 4446 62248727 ~ 62273364 (+)
sos2 sos2 coding downstream 31830 62276111 ~ 62379517 (+)
cdkn3 cdkn3 coding downstream 175075 62419356 ~ 62422349 (+)
lgals3a NA coding downstream 198862 62414368 ~ 62446035 (+)
LOC118941522 LOC106591813 coding downstream 210836 62455117 ~ 62460307 (+)
G1646511 NA non-coding upstream 59444 62157339 ~ 62157659 (+)
G1646510 NA non-coding upstream 59860 62148751 ~ 62157243 (+)
G1646491 NA non-coding upstream 126542 62090347 ~ 62090561 (+)
G1646489 NA non-coding upstream 127621 62089162 ~ 62089482 (+)
G1646486 NA non-coding upstream 132762 62083184 ~ 62084341 (+)
G1646543 NA non-coding downstream 37500 62281781 ~ 62282159 (+)
G1646547 NA non-coding downstream 42554 62286835 ~ 62287087 (+)
G1646548 NA non-coding downstream 43336 62287617 ~ 62287988 (+)
G1646551 NA non-coding downstream 48011 62292292 ~ 62292507 (+)
G1646509 NA other upstream 71813 62144183 ~ 62145290 (+)
G1646294 NA other upstream 656019 61558041 ~ 61561084 (+)
G1646225 NA other upstream 871949 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 925262 61242422 ~ 61308910 (+)
G1646089 NA other upstream 1013751 61200860 ~ 61203352 (+)
srsf5a LOC106611464 other downstream 242720 62486921 ~ 62493719 (+)
G1647342 NA other downstream 772674 63016955 ~ 63018688 (+)
G1647411 NA other downstream 830868 63075149 ~ 63077143 (+)
G1647477 NA other downstream 958475 63202756 ~ 63204057 (+)
LOC110498409 LOC106592792 other downstream 1147344 63380908 ~ 63414582 (+)

Expression


Co-expression Network