lgals3a


Basic Information

Item Value
gene id lgals3a
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62414368 ~ 62446035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955331.1
CTTCCGCCCCATGTTGACGTCATATTCTAGGCGTGAGTGCAGACGGTACACTTCCTTTATTCCAGGAGTTTTTTGTACAGTATTATTTGTAATTTTTATCTCTCAACTGGCAAATTCTTGTTGTTTCTAACTTTAGAATTAGTTAAAGACGTCCCTCTTTTGTCGAGGACATGGATTTCTCGCTGGCAGATGCCATAGCTGACGATGTCCCGGGCCAAGCTGAGAAAGCGGCTAACCCCAACCCAGCCGCCCCCAACGCCCCTCCGCCCACTAACCCAGGATGGCCTGGTGCGGCCCCCGGAGCCCCCACACAGCCCTCTGCTCCTGGGGGATTCCCTGGGGGGCCACAGTCTAGTCCAAGGGCCCCAGGGCAGTTCCCTGGAAGTCAAGGACCCTTCTCTTCCGGTCCCGGAGCACCAGGGCAGTATCCTGGAGCTCCCTCTGCCCCTGGTGGGTTCCCACCCGGCCCAGGGGTACCGGCACAGTACCCAGCTGGGCCTGGAGCCCCGGGACAGTGCCCAGCTGGGCCTGGAGCCCCGGGACAGTACCCAGCTGGGCCTGGAACCCCGGGACAGTACCCAGCTGGGCCTGGAGCCCCGGGACAGTACCCAGCTGGACCTGGAGCCCCGGGACAGTACCCAGCTGGACCTGGAGCCCCGGGACAGTACCCAACTGGACCTGGAGCCCCGGGACAGTACCCAGCTGGACCAGGAGCTCCGGGGCAGTACCCAGCTGGGCCTGGAGCCCCGGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCAGGAGCTCCGGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCAGGAGCTCCGGGGCAATACCCAGCTGGGCCAGGAGCTCCGGGGCAATACCCACCCGGGCCTGGAGCACCTGGACAGTTCCCTGGAGCCCCCATGCAGTACCCGTCTGGACCCTTCCAAACTAGCCCCGGAGCACCAACAGGACCCTACCCCAATGTGCCTTACCCAGGAGCCCAGCCTGGTGGGGGGATGTATGGGCCTGGAGGTCCAGGAGCTGCCTTCTCTCCTGCAGGAGGCACCTTCCCTGGTGGAGCCTTCCCTCCCATCCCCCCTGGATCATGGGGTCCTCGCGGTGGTGGAGGCTTCCCTTCCCAGCCCGGCCACCCAGGGCCCATGGGACCATACGGGGGGCAAGCAGCTCCAGGAGGCATGCTGCACTGCAATAACATTATACTGGTCTGAGGTGTTTTCTGCAGGGCGCAAACCGCAAAAGACAAGCCCAGACATAATATACCATATCCACCACATTTTTGAAAGCACTGAACTCTTCAGATTTTCAGTCAGATGAGGACACCAGCCACAGAAAAAAATCACCTTGTGGTTTTGGTTTAAGAAACTACAAGAAAGCAGCAGCATCATGTATTCAGTTGAAGAGGTTTTTACTAGCTAATAcctgggggaaggggggggggggggggggggcaataatgTTTGCTGTCATTCAAGTGCAATACATAGCCTCGGCTTTTTGTGAAACACCACATTTTATATTAGTTCACTCTTAAACTTTCATTAAGTCACACTTATCTTTTATAATAACATTTATTTTCTACTTTCtaaaaaaagagaagaagaaaaaccaAACATCATTTGGGTAGTAATCGTCCTGTACTTGTGTGTTTTGCCAACGTTGATAAAATGTCCAATTGTGTTAAATATTTGAAATAAAGAATTCTATCACTTGT
>XM_036955330.1
TTCCGCCCCATGTTGACGTCATATTCTAGGCGTGAGTGCAGACGGTACACTTCCTTTATTCCAGGAGTTTTTTGTACAGTATTATTTGTAATTTTTATCTCTCAACTGGCAAATTCTTGTTGTTTCTAACTTTAGAATTAGTTAAAGACGTCCCTCTTTTGTCGAGGACATGGATTTCTCGCTGGCAGATGCCATAGCTGACGATGTCCCGGGCCAAGCTGAGAAAGCGGCTAACCCCAACCCAGCCGCCCCCAACGCCCCTCCGCCCACTAACCCAGGATGGCCTGGTGCGGCCCCCGGAGCCCCCACACAGCCCTCTGCTCCTGGGGGATTCCCTGGGGGGCCACAGTCTAGTCCAAGGGCCCCAGGGCAGTTCCCTGGAAGTCAAGGACCCTTCTCTTCCGGTCCCGGAGCACCAGGGCAGTATCCTGGAGCTCCCTCTGCCCCTGGTGGGTTCCCACCCGGCCCAGGGGTACCGGCACAGTACCCAGCTGGGCCTGGAGCCCCGGGACAGTGCCCAGCTGGGCCTGGAGCCCCGGGACAGTACCCAGCTGGGCCTGGAACCCCGGGACAGTACCCAGCTGGGCCTGGAGCCCCGGGACAGTACCCAGCTGGACCTGGAGCCCCGGGACAGTACCCAGCTGGACCTGGAGCCCCGGGACAGTACCCAACTGGACCTGGAGCCCCGGGACAGTACCCAGCTGGACCAGGAGCTCCGGGGCAGTACCCAGCTGGGCCTGGAGCCCCGGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCAGGAGCTCCGGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCTGGAGCCCCAGGACAGTACCCAGCTGGACCAGGAGCTCCGGGGCAATACCCAGCTGGGCCAGGAGCTCCGGGGCAATACCCACCCGGGCCTGGAGCACCTGGACAGTTCCCTGGAGCCCCCATGCAGTACCCGTCTGGACCCTTCCAAACTAGCCCCGGAGCACCAACAGGACCCTACCCCAATGTGCCTTACCCAGGAGCCCAGCCTGGTGGGGGGATGTATGGGCCTGGAGGTCCAGGAGCTGCCTTCTCTCCTGCAGGAGGCACCTTCCCTGGTGGAGCCTTCCCTCCCATCCCCCCTGGATCATGGGGTCCTCGCGGTGGTGGAGGCTTCCCTTCCCAGCCCGGCCACCCAGGGCCCATGGGACCATACGGGGGGCAAGCAGCTCCAGGAGGCATGCTGCCCAGACATAATATACCATATCCACCACATTTTTGAAAGCACTGAACTCTTCAGATTTTCAGTCAGATGAGGACACCAGCCACAGAAAAAAATCACCTTGTGGTTTTGGTTTAAGAAACTACAAGAAAGCAGCAGCATCATGTATTCAGTTGAAGAGGTTTTTACTAGCTAATAcctgggggaaggggggggggggggggggggcaataatgTTTGCTGTCATTCAAGTGCAATACATAGCCTCGGCTTTTTGTGAAACACCACATTTTATATTAGTTCACTCTTAAACTTTCATTAAGTCACACTTATCTTTTATAATAACATTTATTTTCTACTTTCtaaaaaaagagaagaagaaaaaccaAACATCATTTGGGTAGTAATCGTCCTGTACTTGTGTGTTTTGCCAACGTTGATAAAATGTCCAATTGTGTTAAATATTTGAAATAAAGAATTCTATCACTTGT
>TU1883775
gacctaattcatgtatttcagttgactgatttccttctatgacttgtctgtaactcagtaaaatattttaaattcttacatgttgcgttttatatatatttgttgttgttgttctgtatAAATAAAGAGAGACGGTGGGCTACACAACGGTTGTGTAAAGATTTGTGTAACAGACAAACTCTCCATTGCACAATCATAAATCGTCGTATCAACTCCAATGCATGCTTTATTGGCCCTGTACACACTCAAGTTGCACAACTGATTTTACAAACACATTTGTAAACGAATCGTTGTGACACAAACGGAGAGTTTTACTGCACACACAAGTAACCACACAAGGGTTGTGGAGACACTACAGAATggttgagtaaaaaaaaaaaaagccaAACATCATTTGGGTAGTAATCGTCCTGTACTTGTGTGTTTTGCCAACGTTGATAAAATGTCCAATTGTGTTAAATATTTGAAATAAAGAATTCTATCACTTGTGTTctgattataatttttttttctcttttgcaTCGCAGTGTTTAAAGAAGTAGTTTGGGATGTATGGCCGGTTAAGTTAAATTAATCAAGA

Function

NR:

description
PREDICTED: galectin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955331.1 False 1822 mRNA 0.56 5 62443143 62445944
XM_036955330.1 False 1758 mRNA 0.57 4 62443144 62445944
TU1883775 True 580 lncRNA 0.34 2 62414368 62446035

Neighbor

gene id symbol gene type direction distance location
cdkn3 cdkn3 coding upstream 20794 62419356 ~ 62422349 (+)
sos2 sos2 coding upstream 63626 62276111 ~ 62379517 (+)
l2hgdh l2hgdh coding upstream 169779 62248727 ~ 62273364 (+)
cdkl1 cdkl1 coding upstream 198862 62217103 ~ 62244281 (+)
map4k5 LOC106611444 coding upstream 232690 62095441 ~ 62210453 (+)
LOC118941522 LOC106591813 coding downstream 9173 62455117 ~ 62460307 (+)
LOC110504280 LOC106602928 coding downstream 20310 62466254 ~ 62485447 (+)
srsf5a LOC106611464 coding downstream 40977 62486921 ~ 62493719 (+)
LOC110504279 LOC106599953 coding downstream 54132 62500076 ~ 62602774 (+)
LOC110504278 LOC102780996 coding downstream 158960 62604904 ~ 62638126 (+)
G1646573 NA non-coding upstream 45154 62342250 ~ 62397989 (+)
G1646564 NA non-coding upstream 87592 62328750 ~ 62355551 (+)
G1646569 NA non-coding upstream 107135 62335733 ~ 62336008 (+)
G1646560 NA non-coding upstream 133419 62309441 ~ 62309724 (+)
G1646558 NA non-coding upstream 137969 62304931 ~ 62305174 (+)
G1646607 NA non-coding downstream 2864 62448808 ~ 62449040 (+)
G1646642 NA non-coding downstream 97200 62543144 ~ 62543659 (+)
G1646649 NA non-coding downstream 114262 62560206 ~ 62560803 (+)
G1646650 NA non-coding downstream 115822 62561766 ~ 62562776 (+)
G1646446 NA non-coding downstream 156998 62602942 ~ 62603952 (+)
G1646509 NA other upstream 297853 62144183 ~ 62145290 (+)
G1646294 NA other upstream 882059 61558041 ~ 61561084 (+)
G1646225 NA other upstream 1097989 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 1151302 61242422 ~ 61308910 (+)
G1646089 NA other upstream 1239791 61200860 ~ 61203352 (+)
G1647342 NA other downstream 571011 63016955 ~ 63018688 (+)
G1647411 NA other downstream 629205 63075149 ~ 63077143 (+)
G1647477 NA other downstream 756812 63202756 ~ 63204057 (+)
LOC110498409 LOC106592792 other downstream 945681 63380908 ~ 63414582 (+)
sav1 sav1 coding upstream 375475 62020594 ~ 62038893 (+)

Expression


Co-expression Network