LOC110504280 (LOC106602928)


Basic Information

Item Value
gene id LOC110504280
gene name LOC106602928
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62466254 ~ 62485447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955334.1
CGGGTGATTAACCAGATACTCGAGTGATTAACCAGATACTCGAGTGATTAACCAGATACTCGAGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATACTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATACTCGAGTGATTAACCAGATTCTCGGGTGATTAACCAGATACTCGGGTGATTAACCAGATACTCGTGTGATTAACCAGATTCTCGAGTGATTAACCAGATACTCGGGTGATTAACCAGATTCTCGAGTGATTAACCAGATTCTCGAGTGATTAACCAGATACTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGAGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGAGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCGAGTGATTAACCAGATTCTCGAGTGATTAACCAGATACTTGAGTGATTAACCAGATTCTCGGGTGATTAACCAGATTCTCGAGTGATTAACCAGATTCTCGAGTGATTAACCAGATACTCAAGCTCTGTTAAAATGACTGTCTTCAAAATGGAAAGCAGTCGGtaggaggcaagatcaggtgggaccattctagccaatgagaggacaGATCTCCGATATAAAGTAATTTTTTTCTCTCAATTGTTTCCGCGATatcacgtgtcctacttatacCGGTAACGTTACACTCATAACAACTTAAACAATAtgaaacttctattcgatcaaataagccacACCTTGCAAATAAACCATTACTTTTTTTGTTAACCAAATTCCACActcattgtaaatcagaatttgttcttcttcactgacttgcctagtttaaataaaggttaaaaaaaaaaaactttcaaaaaacgccacctgctggatAAGACAGATTTTGGGCCCATTTATCAATCTCTCTTCGTCTCAACCTctgattatcatcatcatcatcctcccaGGCCAGCTGTGCTGTTTTAGCTGATCGCAGTTTATGCGATAACAGAGGCAACCGAAGGTTTGGTTTCCAGAGCCCTTATTTTTCTCGCTTGGTAATGGAAATGGGCCTTGTTAATAAAAGTTCTGCAACTGGCTAGTTCGAGCTAGCTAGTGAGCTAACTACACGGATTTGTTTTGTGCGTGCCTGTGGTCTTTACAGCCAGAAAGGAAACATTACGTTTCCCCGCTTTGATATTTGATACTTTTTTTTATCTACCTCTAGAGTCTAGATACTCGTAGCTTTTGAACGGACATAATTATTGGACAGAATGTATTATTTTGGCTGAGGACAGAGCATGACAGACATTATTATAACCATCATTCATCTACCCTGGTGCTCCGTTCAGTCCAATACGCCGCGGTGTGAGTAGCCCATCCGGGAAGCGCACATCAGCAGAGGACCATCCTATGCGCCTCTTGGGTGTCGGGGGCGAGAGGTGCTAACTATTCCCAGAGCAATTACGTCGGAGGGAGAGGACGACGTTGCCTTGCCATCTCAGGATTAAACCATGGCTAATGAACCTGTCATCCTTAATGTGTATGATATGTACTGGATCAACGAGTACACTTCCACTCTGGGTGTTGGAGTCTACCACTCAGGCATTGAGATCTATGGCCGAGAGTTTGCGTATGGAGGTCACCCGTACCCGTTTAGTGGTGTATTTGAAATAAACCCTGGAAACACCACTGAATTAGGAGAGACCTTCAAATTCAAGGAGGCCATCGCTTTGGGCACAACAGACTTTGCTGTGGAGGATCTGGATAAAATCATGGAGGACCTGGGAACAGATTTCAAGGGCAACTCCTACCATCTAATGCACAAGAACTGCAACCACTTCTCATCCTCGCTGTCTGAGCTGTTGTGTGGGCGTGAGATCCCTCGCTGGGTGAACCGCCTGGCCTACTTCAGCTCCTGCGTGCCCTTCCTCCAGACCTGCCTCCCTAAGGAGTGGCTGACCCCCGCTGCCCTCCAGAGCCACATCAGCATGGGGCTCCACAAGGAGGCCGGGGAGTCCAGCGACGAGGACCCCAACTCAGCCTCCGGGACCGCTGGGGCGGGCACCGGATCCTCACACAGCTGTCGCCATACACGGGTCTGAACCAATGACTGTATAGGTCTGAAGAGAACAGCCAATAGGACTCTCTTTCAATGACCTTTGACCTCTGGACCAGAAGGTCACCAGCTCAGCCCTGCAGGGGATGTGTAGTGATATTACATCTGTGGGCCTGACTGAATAACCACCTGACCTCATAGTACCACCACTCTGAGAACAGAGATGGGGGACGGATGATTAGTTAGCCTGCTAGTACTAACTCATAAAGCCGCCGGGCCAAGGGGACCTGCGAAATCCTCTTGGATCCTTTTCCTGCTTTTCTCCCTTTTTTTAGAGTACGGTAGATATATTCTGAAGGATTTGTTATAGGCGTTGACAAACTAACTCAGACCATGGCATGGTTCTCTCAGATTGACCACAGCTACGTtatgtagggacggcagggtagcctagtggttggagcgttggactagtaaccagagttcaaatccctgagctgacaaggtacaaatctgttcctaggccgttattgaaaataagaatttgttcttaactgacttgccaagttaaataaaggtaaaatatgtaCTATAGGGCTGGGGTACTTTCTAGTGTTTGTCTTTTTCCCAGGAATTTTTAAACCTTTGTCAGCCTTCATCCCTAACGCCCTCCTTCCAGAGCAGCTTCTTCTTTAGACTAGATGTATATCTGACACCACAGAGATACACCCTAGGCCAATTTCGGGATGCAGTCTTAAGTCTGAGACCACTGGTATTGTGGCATTAGCAGAAGAGGTTCAATAACTCCCTTACTTGGCCTTCAGTTGTAATCATCAGTGATGCCTGTTTTGTTGATGTGTTGGGGTAAGTTAATATGCTGGCCATTTTAGAAGTTGAAGAAGCACAACCATACATAGCGATATATATTCTCTGTTTGGGAGTAACTACCTGTGGGTTGTTTTGAACGAGGACGTTTCTGTTAAACGTCATTCTTAACTGAAAACAATGTGCCTAAGAAACAGAGGATTCGACAACAAGAAGTGAAGACATCTAAATATAATCTCTGATCATATTCATTTTATCATATGAATATTTATATTAGGGTGTTATTTGTCCATAGCATGGTCTCGTGCATTGTTTAACAAGATGATGTCTGCACCCCATGTATTTTGCCAATTTACCACCATTGTGAATAACACTGTCAGATGACTCTGAAAGTTGCATTTACACTCTTCTTCCATGGAAATCTTTCATGATGAAACTCCTAGTAACTGTTGAATCACAGGCCTTGGGTGACACTCCCCGCTGCCTCCCCTACTGCCTTCCCAGCTGATTTCACAGAGTGATTGAGTtggtgtgtatggggggggggctgGGTTACAGTGGGAGCATTGTGTGAAGGAAAAGgggttttgttttctaaatgtcTTTTTGAATTGATGTGGAAATGTCTCTGAATGAGTCGGATTTACACACGTGCTCCCTGAAACAAGGGGGAAGTGGTCCTACCAGTCAAGTTCTGGACTAGTGTACTAAACTGACTACTATTCCATTAAA

Function

NR:

description
PREDICTED: desumoylating isopeptidase 2-like

GO: NA

KEGG:

id description
K22763 DESI2, PPPDE1; deubiquitinase DESI2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955334.1 True 3739 mRNA 0.45 5 62466254 62485447

Neighbor

gene id symbol gene type direction distance location
LOC118941522 LOC106591813 coding upstream 5947 62455117 ~ 62460307 (+)
lgals3a NA coding upstream 20310 62414368 ~ 62446035 (+)
cdkn3 cdkn3 coding upstream 43905 62419356 ~ 62422349 (+)
sos2 sos2 coding upstream 86737 62276111 ~ 62379517 (+)
l2hgdh l2hgdh coding upstream 192890 62248727 ~ 62273364 (+)
srsf5a LOC106611464 coding downstream 1474 62486921 ~ 62493719 (+)
LOC110504279 LOC106599953 coding downstream 14629 62500076 ~ 62602774 (+)
LOC110504278 LOC102780996 coding downstream 119457 62604904 ~ 62638126 (+)
LOC110512290 LOC106600942 coding downstream 170286 62655733 ~ 62771956 (+)
LOC100136022 NA coding downstream 400136 62885583 ~ 63042917 (+)
G1646607 NA non-coding upstream 17214 62448808 ~ 62449040 (+)
G1646573 NA non-coding upstream 68265 62342250 ~ 62397989 (+)
G1646564 NA non-coding upstream 110703 62328750 ~ 62355551 (+)
G1646642 NA non-coding downstream 57697 62543144 ~ 62543659 (+)
G1646649 NA non-coding downstream 74759 62560206 ~ 62560803 (+)
G1646650 NA non-coding downstream 76319 62561766 ~ 62562776 (+)
G1646446 NA non-coding downstream 117495 62602942 ~ 62603952 (+)
G1646666 NA non-coding downstream 128066 62613513 ~ 62614196 (+)
G1646509 NA other upstream 320964 62144183 ~ 62145290 (+)
G1646294 NA other upstream 905170 61558041 ~ 61561084 (+)
G1646225 NA other upstream 1121100 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 1174413 61242422 ~ 61308910 (+)
G1646089 NA other upstream 1262902 61200860 ~ 61203352 (+)
G1647342 NA other downstream 531508 63016955 ~ 63018688 (+)
G1647411 NA other downstream 589702 63075149 ~ 63077143 (+)
G1647477 NA other downstream 717309 63202756 ~ 63204057 (+)
LOC110498409 LOC106592792 other downstream 906178 63380908 ~ 63414582 (+)

Expression


Co-expression Network