LOC100136022


Basic Information

Item Value
gene id LOC100136022
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62885583 ~ 63042917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955347.1
TTGTGCGTGAGGAAACCGATATCGCCCCTGGGGTCATTCTTTCAACGGCAGTAGCTTGTCTACAGCACGTTTGACTGAGGAGCAGGAAGTGCTGATACAAAACCATATTACGTTTATTGCTGAATGATAGATACCTCAGAGTGAAAAGGTCGATTGGAAAAGGGACATTACGCAGTGTCGAAAACACTTCAGAATACCAAAATACAGgTGTTGTGAGGTATCAACAACAGCCCAGTGCTGGATCCCAGAGGGCTTGTCAGTGTGGTAAGGACCCCCAGGACCCCCGAGGGTGGATGGAGCGCTTCAGGCCGAGGCTGACGAGGCTGGGGCAAGGGATCAGGACCGGGTCGTCGTCCTCTTACCCAGCATGCCTCTGGTTGGGCCTGCTCTCTGTGGCCGCCTCCTTCCTGTGCGCAGAGGGCGATCGCACCACCCCCAGCCCCGCCACCACAGACTCCCACAATGCCACCTGCTCCGAAGGCACGTCCAGGTGCAAGCCAGGAATTGTCTTGCCCATCTGGTACCCTGAGGACCCCTCCATGGGGGATAAGATGGCCCGAGTCATCGTCTACTTCGTAGCTATGATCTACATGTTCCTGGGAGTGTCCATCATAGCAGATCGCTTCATGGCGGCCATCGAGGTCATCACCTCCCAGGAGAAGGAGATTATTATTAAGAGAGCCAACGGAGAGACCACCACCGCTACCATCAGAGTCTGGAACGAGACGGTCTCCAACCTGACCCTCATGGCCCTGGGTTCTAGTACCCCTGAGATCCTGCTGTCTGTCATTGAAGTCTGTGGACACAACTTCGTAGCTGGCGAGCTGGGGCCGTCTACGATCGTCGGCAGCGCTGCCTTTAACATGTTCGTGATCAtcggcctgtgtgtgtctgtgatccCCGAGGGAGAGACGAGGAAGGTGAAACATCTCAGAGTGTTCTTTGTGACGGCGGCGTGGAGTATCTTCGCCTACATCTGGCTCTACATGATCCTGGCGGTGTTCAGTCCCAACGTGGTCCAGATATGGGAGGGGCTGCTAACCCTGGCCTTCTTCCCCATCTGTGTCATCCTGGCCTGGCTAGCCGACCGACGACTCCTCTTCTACAAGTTCATGCATAAGAAGTACCGTGCCGACAACCACCGTGGCGTCATCATCGAGACCGAGCACGAGCGCTCCAAGGGCATCGAGATGATGGACGGCGGCGGCAAGATGGTCAACTCACACTTCGCCCACGACGGAGGCGCCGCCCATAACCTCATCAGCCTGATCGAGGGGAAAGAAGTGGACGAGTCTCGGCGGGATATGATCCGGATCCTGAAGGACCTGAAGCAGAAACACCCAGAGAAGGAGATGGACCAGCTGGTAGAGATGGCTAACTACTACGCCTTGTCTCACCAGCAGAAGAGCCGAGCCTTCTACCGCATCCAGGCCACGCGCATGATGACGGGCGCCGGGAACATCCTGAAGAAGCACGTGGCGGAGCAGACCAAGAGGAGCGCCAGCGTACAGGAAGTGTGTGTGGTAGGGGAGGAAGTCGAGGAGTACGTGTCACGGATCGCCTTCGAACCCGCCGTGTACCAGTGCCTGGAGAACTGCGGCGCCGCCCTGCTGGCCATCTCCAGGAAGGGCGGCGATATGGCCAAGACCATCTATGTTGACTACAAGACAGAGGACGGCTCAGCCAACGCCGGCGCCGACTACGAGTTCACAGAGGGCACGGTGGTGTTCAAGCCCGGCGAGTTCATCAAGGAGATCAGCATCGGCATCATCGATGACGACATCTTCGAGGAGGACGAGCACTTCTTCGTGCGTCTCAGCAACGTGCGCGTGTTGGAGTCTGACGAGGACGAGACACTACTGTCTCCGAACTCTCTCCCGTACCCCAAGGCCCTGCTGGGGTTCCCTGCCATCGCCACCGTTACCATCCTGGACGACGACCACGCCGGGATATTCACCTTCGAGACCGACACGTGTCACGTGAGTGAGAGCGTGGGCGTAATGGAGGTGAAGGTGCTGAGGACTTCGGGGGCGAGGGGAACGGTCATCGTGCCATATCGTACCATGGAGGGGATCgccaagggaggaggggaggacttTGAGGACACCTACGGAGAACTGGAGTTCAAGAACGATGAGACCTGCAAGATGGTTCAGGTGAAGGTGATAGACGATGAGGAGTATGAGAAAAACAAGAACTTCTTCCTGGAGTTGGCCGAGCCGCGCATGGTAGACATGAGCCTGCAGAAAGATGTCCCAAAGTTGTtgtcagaggaagaggaagcTAAGCGGAATGCAGAGATGGGGAAACCATCTCTGGGGGAACACTCCAAAATGGAGGTTTTCATCGAGGAGTCCTATGAGTTCAAGAATACGGTGGATAAGCTGATAAAGAAGACCAACCTGGCTCTGGTGGTGGGCACCAACTCCTGGAGACAACAGTTCATGGAGGCCATCACAGTCAGTGCAGGAGACGAGGATGAGGAAGACTCCGGTGAAGAGCGTCTTCCGTCTTGTTGTGACTACGTCATGCACTTCCTCACCGTCTTCTGGAAGgtGCTGTTCGCCTGTGTTCCTCCCACGGACTACCTGAACGGCTGGGCCTGCTTCTTCATCTCCATCGTCATCATCGGCATGCTGACCGCAGTGATCGGAGATCTGGCCTCTCACTTTGGCTGCACCATCGGGCTGAAGGACTCCGTCACTGCCATGGTGTTCGTGGCGCTGGGTACGTCTGTCCCTGacacaTTTGCCAGTAAGGTAGCGGCGGTGCAGGACACACATGCAGACGCCTCCATCGGTAATGTGACGGGCAGCAACGCGGTCAACGTGTTCCTGGGCATCGGGGTGGCGTGGTCGATAGCCGCCATTTACTGGCACATGCAAGGCAAGCAGTTTGTGGTGGAGGCCGGCTCGCTGGCCTTCTCCGTCACCCTCTACACCATCTTCGCCTTCCTGGGGGTCTCCGTGCTGCTGTACCGCCGCCGGGCCCACATCGGGGGGGAGCTGGGCGGGCCGCGCGGCCACAGACTGGCCACCTCAGCCTTCTTCTTCAGTCTCTGGTTCCTCTACATCCTCTTCTCCAGCATGGAGGCCTACTGTCATATAGAGGGCTTCTAGAACCTCCTGGAACACTTCTGTAACACTTCTAGAACACCTCTGAGACACTTCTAGAACTCTTCTGAGACACTTCTAGAATTCTTCTGAGACACTTCTAGAATACTTCTGAGACACTTCTAGAATACTTCTGGGACACTTCTAGAATACTTCTGGGACACTTCTAGAATTCTTCTGAGACACTTCTAGAATACTTCTGGGACACTTCTAGAATACTTCTGGGACACTTCTAGAGCCTCCTTACAGGAGGTTCAAAGTATAACTTAATGGAGAGTAAAAGTAGGATTCTCAGTGTGGaatgatggaatgatggaatgATATTTTGTTGGTAtgaagggatgagaggaggagaacagtATGAGGTAAAGGGAGTGGTGGCCCCCCTCTCCTCCGCCCCTCCACCTTCCCTCAACCCCACTCTAAGAACCCCCAGACATAATCAGTCCATCTCCTCTGAAGGAGATGTCTGTTAAGGCAGGGAGAGCCGGTCTGCTACCCACATGGGTGTGCTTACAGCTGGGGTTAGGGTACCTCTATACCGGGGTAAGAACACCAGAGGGTGTCtcatctggtctggtctgtaatCCACTAGAAGAGACAATAAGCTGATGAGATCTGAGCTATCAGAAGAAGTCTATATTTTTCTCAACACCTTGATGAGAACAACCTTTTCTAGACTAAGTATTTTGGGGGATAAAaccaaaacacttttttttttttttacaaaaaaaaaagaggaaaTCAAAGATACTATTTTTTAGATCTTTATGGAGAACAAAACATGTTATATAACTAATGGAACAGATATTGTTGATGATGAATGACAATTGAATGGTCATAGTATTTAATAGTATTTTATTTGCTTAGTTTCTTATTAAGGAACGAATAAGAGGCAAGAAACAGCAGAGTTGTCAGAGGcaagaaactaaaacaggaagcgcccgtggaggaggaagaggaggaggaggaacaacaGAGAACAAGTACAGACAGATCAACTATCAAACtaaagacaggaggaggaggaggagcaagaggaggaggaggaggaggaggagtggaagaAGATGAGGAAGACATTGAAGGATAACATTATCAGAGTGCCCTGAACATTACTTCAGTACATCTGTCT
>XM_036955348.1
TTGTGCGTGAGGAAACCGATATCGCCCCTGGGGTCATTCTTTCAACGGCAGTAGCTTGTCTACAGCACGTTTGACTGAGGAGCAGGAAGTGCTGATACAAAACCATATTACGTTTATTGCTGAATGATAGATACCTCAGAGTGAAAAGGTCGATTGGAAAAGGGACATTACGCAGTGTCGAAAACACTTCAGAATACCAAAATACAGgTGTTGTGAGGTATCAACAACAGCCCAGTGCTGGATCCCAGAGGGCTTGTCAGTGTGGTAAGGACCCCCAGGACCCCCGAGGGTGGATGGAGCGCTTCAGGCCGAGGCTGACGAGGCTGGGGCAAGGGATCAGGACCGGGTCGTCGTCCTCTTACCCAGCATGCCTCTGGTTGGGCCTGCTCTCTGTGGCCGCCTCCTTCCTGTGCGCAGAGGGCGATCGCACCACCCCCAGCCCCGCCACCACAGACTCCCACAATGCCACCTGCTCCGAAGGCACGTCCAGGTGCAAGCCAGGAATTGTCTTGCCCATCTGGTACCCTGAGGACCCCTCCATGGGGGATAAGATGGCCCGAGTCATCGTCTACTTCGTAGCTATGATCTACATGTTCCTGGGAGTGTCCATCATAGCAGATCGCTTCATGGCGGCCATCGAGGTCATCACCTCCCAGGAGAAGGAGATTATTATTAAGAGAGCCAACGGAGAGACCACCACCGCTACCATCAGAGTCTGGAACGAGACGGTCTCCAACCTGACCCTCATGGCCCTGGGTTCTAGTACCCCTGAGATCCTGCTGTCTGTCATTGAAGTCTGTGGACACAACTTCGTAGCTGGCGAGCTGGGGCCGTCTACGATCGTCGGCAGCGCTGCCTTTAACATGTTCGTGATCAtcggcctgtgtgtgtctgtgatccCCGAGGGAGAGACGAGGAAGGTGAAACATCTCAGAGTGTTCTTTGTGACGGCGGCGTGGAGTATCTTCGCCTACATCTGGCTCTACATGATCCTGGCGGTGTTCAGTCCCAACGTGGTCCAGATATGGGAGGGGCTGCTAACCCTGGCCTTCTTCCCCATCTGTGTCATCCTGGCCTGGCTAGCCGACCGACGACTCCTCTTCTACAAGTTCATGCATAAGAAGTACCGTGCCGACAACCACCGTGGCGTCATCATCGAGACCGAGCACGAGCGCTCCAAGGGCATCGAGATGATGGACGGCGGCGGCAAGATGGTCAACTCACACTTCGCCCACGACGGAGGCGCCGCCCATAACCTCATCAGCCTGATCGAGGGGAAAGAAGTGGACGAGTCTCGGCGGGATATGATCCGGATCCTGAAGGACCTGAAGCAGAAACACCCAGAGAAGGAGATGGACCAGCTGGTAGAGATGGCTAACTACTACGCCTTGTCTCACCAGCAGAAGAGCCGAGCCTTCTACCGCATCCAGGCCACGCGCATGATGACGGGCGCCGGGAACATCCTGAAGAAGCACGTGGCGGAGCAGACCAAGAGGAGCGCCAGCGTACAGGAAGTGTGTGTGGTAGGGGAGGAAGTCGAGGAGTACGTGTCACGGATCGCCTTCGAACCCGCCGTGTACCAGTGCCTGGAGAACTGCGGCGCCGCCCTGCTGGCCATCTCCAGGAAGGGCGGCGATATGGCCAAGACCATCTATGTTGACTACAAGACAGAGGACGGCTCAGCCAACGCCGGCGCCGACTACGAGTTCACAGAGGGCACGGTGGTGTTCAAGCCCGGCGAGTTCATCAAGGAGATCAGCATCGGCATCATCGATGACGACATCTTCGAGGAGGACGAGCACTTCTTCGTGCGTCTCAGCAACGTGCGCGTGTTGGAGTCTGACGAGGACGAGACACTACTGTCTCCGAACTCTCTCCCGTACCCCAAGGCCCTGCTGGGGTTCCCTGCCATCGCCACCGTTACCATCCTGGACGACGACCACGCCGGGATATTCACCTTCGAGACCGACACGTGTCACGTGAGTGAGAGCGTGGGCGTAATGGAGGTGAAGGTGCTGAGGACTTCGGGGGCGAGGGGAACGGTCATCGTGCCATATCGTACCATGGAGGGGATCgccaagggaggaggggaggacttTGAGGACACCTACGGAGAACTGGAGTTCAAGAACGATGAGACCTGCAAGATGGTTCAGGTGAAGGTGATAGACGATGAGGAGTATGAGAAAAACAAGAACTTCTTCCTGGAGTTGGCCGAGCCGCGCATGGTAGACATGAGCCTGCAGAAAGATGTCCCAAAGTTGTtgtcagaggaagaggaagcTAAGCGGAATGCAGAGATGGGGAAACCATCTCTGGGGGAACACTCCAAAATGGAGGTTTTCATCGAGGAGTCCTATGAGTTCAAGAATACGGTGGATAAGCTGATAAAGAAGACCAACCTGGCTCTGGTGGTGGGCACCAACTCCTGGAGACAACAGTTCATGGAGGCCATCACAGTCAGTGCAGACGAGGATGAGGAAGACTCCGGTGAAGAGCGTCTTCCGTCTTGTTGTGACTACGTCATGCACTTCCTCACCGTCTTCTGGAAGgtGCTGTTCGCCTGTGTTCCTCCCACGGACTACCTGAACGGCTGGGCCTGCTTCTTCATCTCCATCGTCATCATCGGCATGCTGACCGCAGTGATCGGAGATCTGGCCTCTCACTTTGGCTGCACCATCGGGCTGAAGGACTCCGTCACTGCCATGGTGTTCGTGGCGCTGGGTACGTCTGTCCCTGacacaTTTGCCAGTAAGGTAGCGGCGGTGCAGGACACACATGCAGACGCCTCCATCGGTAATGTGACGGGCAGCAACGCGGTCAACGTGTTCCTGGGCATCGGGGTGGCGTGGTCGATAGCCGCCATTTACTGGCACATGCAAGGCAAGCAGTTTGTGGTGGAGGCCGGCTCGCTGGCCTTCTCCGTCACCCTCTACACCATCTTCGCCTTCCTGGGGGTCTCCGTGCTGCTGTACCGCCGCCGGGCCCACATCGGGGGGGAGCTGGGCGGGCCGCGCGGCCACAGACTGGCCACCTCAGCCTTCTTCTTCAGTCTCTGGTTCCTCTACATCCTCTTCTCCAGCATGGAGGCCTACTGTCATATAGAGGGCTTCTAGAACCTCCTGGAACACTTCTGTAACACTTCTAGAACACCTCTGAGACACTTCTAGAACTCTTCTGAGACACTTCTAGAATTCTTCTGAGACACTTCTAGAATACTTCTGAGACACTTCTAGAATACTTCTGGGACACTTCTAGAATACTTCTGGGACACTTCTAGAATTCTTCTGAGACACTTCTAGAATACTTCTGGGACACTTCTAGAATACTTCTGGGACACTTCTAGAGCCTCCTTACAGGAGGTTCAAAGTATAACTTAATGGAGAGTAAAAGTAGGATTCTCAGTGTGGaatgatggaatgatggaatgATATTTTGTTGGTAtgaagggatgagaggaggagaacagtATGAGGTAAAGGGAGTGGTGGCCCCCCTCTCCTCCGCCCCTCCACCTTCCCTCAACCCCACTCTAAGAACCCCCAGACATAATCAGTCCATCTCCTCTGAAGGAGATGTCTGTTAAGGCAGGGAGAGCCGGTCTGCTACCCACATGGGTGTGCTTACAGCTGGGGTTAGGGTACCTCTATACCGGGGTAAGAACACCAGAGGGTGTCtcatctggtctggtctgtaatCCACTAGAAGAGACAATAAGCTGATGAGATCTGAGCTATCAGAAGAAGTCTATATTTTTCTCAACACCTTGATGAGAACAACCTTTTCTAGACTAAGTATTTTGGGGGATAAAaccaaaacacttttttttttttttacaaaaaaaaaagaggaaaTCAAAGATACTATTTTTTAGATCTTTATGGAGAACAAAACATGTTATATAACTAATGGAACAGATATTGTTGATGATGAATGACAATTGAATGGTCATAGTATTTAATAGTATTTTATTTGCTTAGTTTCTTATTAAGGAACGAATAAGAGGCAAGAAACAGCAGAGTTGTCAGAGGcaagaaactaaaacaggaagcgcccgtggaggaggaagaggaggaggaggaacaacaGAGAACAAGTACAGACAGATCAACTATCAAACtaaagacaggaggaggaggaggagcaagaggaggaggaggaggaggaggagtggaagaAGATGAGGAAGACATTGAAGGATAACATTATCAGAGTGCCCTGAACATTACTTCAGTACATCTGTCT
>TU1884868
caagaggaggaggaggaggaggaggagtggaagaAGATGAGGAAGACATTGAAGGATAACATTATCAGAGTGCCCTGAACATTACTTCAGTACATCTGTCTGTATATTTCCATATACTCTGTATATTTTGACTATTTATTTCAATGTGGTCACATTCAGCTTCTTCAGTCCTACAGGGACTTCAGCTCCTACAGGGACTACTGTGGCTtggtatgaggggggggggggggggggggggggggatgcctgtgtcgcaaatggcaccctattcactatatagtgcactactttagaccagggccgaTATGGTTCTGGctctgcactatatagggaatagggttccattttagCTGCGTCCCAATGTCTTCTTCATGTTTTCTAAAATATCTATTATATCTCCCTAAAACATTTAAGAAATGACATTGTTATATTATTTGttattaataacaataatatcTTGCTCTTACAAAGTTTTCAAAAATCCCCTCAAGAATTGTGTTTCTGCAGAGAACTGTAACAGATTGATAATTTACAGGTATTTTTCTACTGGTCTTCCCATGATGCACTTTGCTAATATACATCTATTTATTGAGACttcttctgtaaaaaaaaaaaaatatgctaCAAAATGGCAATATTGAACTGTAAGACTAGGAACACGTGTCATCCTCTGTAGCTCACTACATGCATGGTCTGAGAGGGTTGAGATGAGATGGCCTGACTCGTGTCTCATTGACAAGCTTTTCCTTCCATTCATGTGATACTTAATCAGAGTAAATATTCGTTAACATTTGTTACATATTCAAAGGGATATATGTGTTAAATAGAATGCCCGCTGGTATAGAGGGGGTTAGAGAGCAAGCCGGTACAGGAATGTTGTTTGGGTGTAATCATGTATTGAAGGCTGTTATGTTTAGTGTGCCTGGTAACTCACAATCTACAGTAGGTTACATCCCactggctcagagagagagagagagagagagagagagagagagagctgagacacagagagagagagagggagagagagagagagctgagacaccgagacaccgagagagagagagagagagagagagcagagacagatagagacagagagagagagagagagctgagacaccgagagagagagagagtgaaagagagagagagagggttagagagagaggagaagggagagaagagagagagctgagagagagaggagaagggagagagagagagagagagagggggggggagagagagagagagctgagacggagggagagagagagagagagagatgagacagagagatgagacacagagagagagagagagagagagagagggagagagagagagctgagacagatagagagagagagtcagagagctgagacaccgagagagagagaggagaagggagagaagagagagagctgagacagagagagagagagaggagaagggagagagagagagagagagggggagggagagagagctgagacagacagagagagagagagagagagagagagagagagagcagtatggGGTACTGGAGATGTGTGTAGTGGGTTGTACTGTAACACAACTGGTGATTTGGTTTTATGACATTAAAAACTCGTGTATACTGATTTCTCTCAA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955347.1 False 4248 mRNA 0.53 8 62885583 63040906
XM_036955348.1 False 4245 mRNA 0.53 8 62885583 63040906
TU1884868 True 1641 lncRNA 0.44 3 63040806 63042917

Neighbor

gene id symbol gene type direction distance location
LOC110512290 LOC106600942 coding upstream 113627 62655733 ~ 62771956 (+)
LOC110504278 LOC102780996 coding upstream 247457 62604904 ~ 62638126 (+)
LOC110504279 LOC106599953 coding upstream 282809 62500076 ~ 62602774 (+)
srsf5a LOC106611464 coding upstream 391945 62486921 ~ 62493719 (+)
LOC110504280 LOC106602928 coding upstream 400136 62466254 ~ 62485447 (+)
map3k9 map3k9 coding downstream 9911 63050817 ~ 63103044 (+)
med6 med6 coding downstream 100517 63141423 ~ 63152629 (+)
pcnx1 pcnx1 coding downstream 112447 63153353 ~ 63232158 (+)
LOC110498282 NA coding downstream 207716 63248622 ~ 63287372 (+)
LOC110498284 chp1 coding downstream 251663 63292569 ~ 63309243 (+)
G1647320 NA non-coding upstream 249 62884931 ~ 62885334 (+)
G1647311 NA non-coding upstream 16690 62868238 ~ 62868893 (+)
G1647295 NA non-coding upstream 75319 62809721 ~ 62810264 (+)
G1647278 NA non-coding upstream 119236 62765901 ~ 62766347 (+)
G1647275 NA non-coding upstream 136951 62746494 ~ 62748632 (+)
G1647397 NA non-coding downstream 7320 63048226 ~ 63048719 (+)
G1647411 NA non-coding downstream 34243 63075149 ~ 63077143 (+)
G1647437 NA non-coding downstream 74173 63115079 ~ 63115647 (+)
G1647431 NA non-coding downstream 74851 63115757 ~ 63116831 (+)
G1647433 NA non-coding downstream 80861 63121767 ~ 63124124 (+)
G1646509 NA other upstream 740293 62144183 ~ 62145290 (+)
G1646294 NA other upstream 1324499 61558041 ~ 61561084 (+)
G1646225 NA other upstream 1540429 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 1593742 61242422 ~ 61308910 (+)
G1647477 NA other downstream 161850 63202756 ~ 63204057 (+)
LOC110498409 LOC106592792 other downstream 350719 63380908 ~ 63414582 (+)
G1648296 NA other downstream 1087302 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1939458 64980364 ~ 64980943 (+)
G1647349 NA non-coding upstream 109803 62930573 ~ 62931003 (+)
G1647335 NA non-coding upstream 127813 62912566 ~ 62912993 (+)
G1647330 NA non-coding upstream 132489 62907012 ~ 62908317 (+)
G1647325 NA non-coding upstream 143524 62897063 ~ 62897282 (+)
G1647323 NA non-coding upstream 148225 62890057 ~ 62892581 (+)
G1647342 NA other upstream 22118 63016955 ~ 63018688 (+)

Expression


Co-expression Network