RNA id: XM_036955347.1


Basic Information

Item Value
RNA id XM_036955347.1
length 4248
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC100136022
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62885583 ~ 63042917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGCGTGAGGAAACCGATATCGCCCCTGGGGTCATTCTTTCAACGGCAGTAGCTTGTCTACAGCACGTTTGACTGAGGAGCAGGAAGTGCTGATACAAAACCATATTACGTTTATTGCTGAATGATAGATACCTCAGAGTGAAAAGGTCGATTGGAAAAGGGACATTACGCAGTGTCGAAAACACTTCAGAATACCAAAATACAGgTGTTGTGAGGTATCAACAACAGCCCAGTGCTGGATCCCAGAGGGCTTGTCAGTGTGGTAAGGACCCCCAGGACCCCCGAGGGTGGATGGAGCGCTTCAGGCCGAGGCTGACGAGGCTGGGGCAAGGGATCAGGACCGGGTCGTCGTCCTCTTACCCAGCATGCCTCTGGTTGGGCCTGCTCTCTGTGGCCGCCTCCTTCCTGTGCGCAGAGGGCGATCGCACCACCCCCAGCCCCGCCACCACAGACTCCCACAATGCCACCTGCTCCGAAGGCACGTCCAGGTGCAAGCCAGGAATTGTCTTGCCCATCTGGTACCCTGAGGACCCCTCCATGGGGGATAAGATGGCCCGAGTCATCGTCTACTTCGTAGCTATGATCTACATGTTCCTGGGAGTGTCCATCATAGCAGATCGCTTCATGGCGGCCATCGAGGTCATCACCTCCCAGGAGAAGGAGATTATTATTAAGAGAGCCAACGGAGAGACCACCACCGCTACCATCAGAGTCTGGAACGAGACGGTCTCCAACCTGACCCTCATGGCCCTGGGTTCTAGTACCCCTGAGATCCTGCTGTCTGTCATTGAAGTCTGTGGACACAACTTCGTAGCTGGCGAGCTGGGGCCGTCTACGATCGTCGGCAGCGCTGCCTTTAACATGTTCGTGATCAtcggcctgtgtgtgtctgtgatccCCGAGGGAGAGACGAGGAAGGTGAAACATCTCAGAGTGTTCTTTGTGACGGCGGCGTGGAGTATCTTCGCCTACATCTGGCTCTACATGATCCTGGCGGTGTTCAGTCCCAACGTGGTCCAGATATGGGAGGGGCTGCTAACCCTGGCCTTCTTCCCCATCTGTGTCATCCTGGCCTGGCTAGCCGACCGACGACTCCTCTTCTACAAGTTCATGCATAAGAAGTACCGTGCCGACAACCACCGTGGCGTCATCATCGAGACCGAGCACGAGCGCTCCAAGGGCATCGAGATGATGGACGGCGGCGGCAAGATGGTCAACTCACACTTCGCCCACGACGGAGGCGCCGCCCATAACCTCATCAGCCTGATCGAGGGGAAAGAAGTGGACGAGTCTCGGCGGGATATGATCCGGATCCTGAAGGACCTGAAGCAGAAACACCCAGAGAAGGAGATGGACCAGCTGGTAGAGATGGCTAACTACTACGCCTTGTCTCACCAGCAGAAGAGCCGAGCCTTCTACCGCATCCAGGCCACGCGCATGATGACGGGCGCCGGGAACATCCTGAAGAAGCACGTGGCGGAGCAGACCAAGAGGAGCGCCAGCGTACAGGAAGTGTGTGTGGTAGGGGAGGAAGTCGAGGAGTACGTGTCACGGATCGCCTTCGAACCCGCCGTGTACCAGTGCCTGGAGAACTGCGGCGCCGCCCTGCTGGCCATCTCCAGGAAGGGCGGCGATATGGCCAAGACCATCTATGTTGACTACAAGACAGAGGACGGCTCAGCCAACGCCGGCGCCGACTACGAGTTCACAGAGGGCACGGTGGTGTTCAAGCCCGGCGAGTTCATCAAGGAGATCAGCATCGGCATCATCGATGACGACATCTTCGAGGAGGACGAGCACTTCTTCGTGCGTCTCAGCAACGTGCGCGTGTTGGAGTCTGACGAGGACGAGACACTACTGTCTCCGAACTCTCTCCCGTACCCCAAGGCCCTGCTGGGGTTCCCTGCCATCGCCACCGTTACCATCCTGGACGACGACCACGCCGGGATATTCACCTTCGAGACCGACACGTGTCACGTGAGTGAGAGCGTGGGCGTAATGGAGGTGAAGGTGCTGAGGACTTCGGGGGCGAGGGGAACGGTCATCGTGCCATATCGTACCATGGAGGGGATCgccaagggaggaggggaggacttTGAGGACACCTACGGAGAACTGGAGTTCAAGAACGATGAGACCTGCAAGATGGTTCAGGTGAAGGTGATAGACGATGAGGAGTATGAGAAAAACAAGAACTTCTTCCTGGAGTTGGCCGAGCCGCGCATGGTAGACATGAGCCTGCAGAAAGATGTCCCAAAGTTGTtgtcagaggaagaggaagcTAAGCGGAATGCAGAGATGGGGAAACCATCTCTGGGGGAACACTCCAAAATGGAGGTTTTCATCGAGGAGTCCTATGAGTTCAAGAATACGGTGGATAAGCTGATAAAGAAGACCAACCTGGCTCTGGTGGTGGGCACCAACTCCTGGAGACAACAGTTCATGGAGGCCATCACAGTCAGTGCAGGAGACGAGGATGAGGAAGACTCCGGTGAAGAGCGTCTTCCGTCTTGTTGTGACTACGTCATGCACTTCCTCACCGTCTTCTGGAAGgtGCTGTTCGCCTGTGTTCCTCCCACGGACTACCTGAACGGCTGGGCCTGCTTCTTCATCTCCATCGTCATCATCGGCATGCTGACCGCAGTGATCGGAGATCTGGCCTCTCACTTTGGCTGCACCATCGGGCTGAAGGACTCCGTCACTGCCATGGTGTTCGTGGCGCTGGGTACGTCTGTCCCTGacacaTTTGCCAGTAAGGTAGCGGCGGTGCAGGACACACATGCAGACGCCTCCATCGGTAATGTGACGGGCAGCAACGCGGTCAACGTGTTCCTGGGCATCGGGGTGGCGTGGTCGATAGCCGCCATTTACTGGCACATGCAAGGCAAGCAGTTTGTGGTGGAGGCCGGCTCGCTGGCCTTCTCCGTCACCCTCTACACCATCTTCGCCTTCCTGGGGGTCTCCGTGCTGCTGTACCGCCGCCGGGCCCACATCGGGGGGGAGCTGGGCGGGCCGCGCGGCCACAGACTGGCCACCTCAGCCTTCTTCTTCAGTCTCTGGTTCCTCTACATCCTCTTCTCCAGCATGGAGGCCTACTGTCATATAGAGGGCTTCTAGAACCTCCTGGAACACTTCTGTAACACTTCTAGAACACCTCTGAGACACTTCTAGAACTCTTCTGAGACACTTCTAGAATTCTTCTGAGACACTTCTAGAATACTTCTGAGACACTTCTAGAATACTTCTGGGACACTTCTAGAATACTTCTGGGACACTTCTAGAATTCTTCTGAGACACTTCTAGAATACTTCTGGGACACTTCTAGAATACTTCTGGGACACTTCTAGAGCCTCCTTACAGGAGGTTCAAAGTATAACTTAATGGAGAGTAAAAGTAGGATTCTCAGTGTGGaatgatggaatgatggaatgATATTTTGTTGGTAtgaagggatgagaggaggagaacagtATGAGGTAAAGGGAGTGGTGGCCCCCCTCTCCTCCGCCCCTCCACCTTCCCTCAACCCCACTCTAAGAACCCCCAGACATAATCAGTCCATCTCCTCTGAAGGAGATGTCTGTTAAGGCAGGGAGAGCCGGTCTGCTACCCACATGGGTGTGCTTACAGCTGGGGTTAGGGTACCTCTATACCGGGGTAAGAACACCAGAGGGTGTCtcatctggtctggtctgtaatCCACTAGAAGAGACAATAAGCTGATGAGATCTGAGCTATCAGAAGAAGTCTATATTTTTCTCAACACCTTGATGAGAACAACCTTTTCTAGACTAAGTATTTTGGGGGATAAAaccaaaacacttttttttttttttacaaaaaaaaaagaggaaaTCAAAGATACTATTTTTTAGATCTTTATGGAGAACAAAACATGTTATATAACTAATGGAACAGATATTGTTGATGATGAATGACAATTGAATGGTCATAGTATTTAATAGTATTTTATTTGCTTAGTTTCTTATTAAGGAACGAATAAGAGGCAAGAAACAGCAGAGTTGTCAGAGGcaagaaactaaaacaggaagcgcccgtggaggaggaagaggaggaggaggaacaacaGAGAACAAGTACAGACAGATCAACTATCAAACtaaagacaggaggaggaggaggagcaagaggaggaggaggaggaggaggagtggaagaAGATGAGGAAGACATTGAAGGATAACATTATCAGAGTGCCCTGAACATTACTTCAGTACATCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1884874 lncRNA upstream 249 62884931 ~ 62885334 (+) True G1647320
TU1884861 lncRNA upstream 16690 62868238 ~ 62868893 (+) True G1647311
TU1884845 lncRNA upstream 75319 62809721 ~ 62810264 (+) True G1647295
TU1884828 lncRNA upstream 119236 62765901 ~ 62766347 (+) True G1647278
TU1884823 lncRNA upstream 136951 62746494 ~ 62748632 (+) True G1647275
TU1884957 lncRNA downstream 7320 63048226 ~ 63048719 (+) True G1647397
TU1884974 lncRNA downstream 34243 63075149 ~ 63077143 (+) False G1647411
TU1885033 lncRNA downstream 74173 63115079 ~ 63115647 (+) True G1647437
TU1885027 lncRNA downstream 74851 63115757 ~ 63116831 (+) True G1647431
TU1885029 lncRNA downstream 80861 63121767 ~ 63124124 (+) True G1647433
XM_036955342.1 mRNA upstream 113627 62655733 ~ 62771956 (+) False LOC110512290
XM_036955344.1 mRNA upstream 113627 62655733 ~ 62771956 (+) False LOC110512290
XM_036955343.1 mRNA upstream 113627 62655734 ~ 62771956 (+) False LOC110512290
XM_036955345.1 mRNA upstream 113627 62696384 ~ 62771956 (+) False LOC110512290
XM_036955346.1 mRNA upstream 113627 62696847 ~ 62771956 (+) True LOC110512290
XM_036955349.1 mRNA downstream 9911 63050817 ~ 63103044 (+) True map3k9
XM_021574931.2 mRNA downstream 100517 63141423 ~ 63152629 (+) True med6
XM_036955352.1 mRNA downstream 112447 63153353 ~ 63232158 (+) False pcnx1
XR_005037831.1 mRNA downstream 112447 63153353 ~ 63232158 (+) False pcnx1
XM_036955351.1 mRNA downstream 112448 63153354 ~ 63232158 (+) True pcnx1
TU1883744 other upstream 391864 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 740293 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 1324499 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1540429 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1593742 61279819 ~ 61291841 (+) False LOC110498404
TU1884975 other downstream 34243 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 161850 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 350719 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 1087302 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1939458 64980364 ~ 64980943 (+) False G1648608

Expression Profile