RNA id: TU1885027


Basic Information

Item Value
RNA id TU1885027
length 1075
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1647431
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63115757 ~ 63116831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaggtcctactgcctgtaaacacacagtccagttcaaagtgaatgatgacaggtcctactgcctgtaaacacacagtccagttcaaagtgaatgatgacaggttctactgcctgtaaacacacagtccagttcaaagtgaacgatggcaggtcctactgcctgtaaacacacagtccagttcaaagtgaatgatgacaggtcctactgcctgtaaacacacagtccagttcaaagtgaatgatgacaggtcctactgcctgtaaacacacagtccagttcatagtgaatgatgacaggccctactgcctgtaaacacacagtccagttcaaagtgaatgatgacaggtcctactgcctgtaaacacacagtccagttcaaagtcaATGGTGGCAGGCCCATATGGCAAATGGCTTATTACtacctactgtagctctgattggctatggcacACCGGTCTGCATTGACTCTGGTCCTGGATGAGACCGGTGTTTCTAATGggggttttatttactgcagtgtctaccAATTGTCCAAAACACATGGctgctttcccactctatattgatatagaattttcacaaatgccttactcTACGTCATTCCTAAACATTCTATGATTTTATGAAAACGTGAAAATGACGATATCTAAGTGCTTGTTtgtcagaaaatgtaaaaaaataataataataataataaataaaaaatatattcttcctgggggtgtatgTGAACAGATTGTAATATGATTTCCTGTTGTTAAAAACGCTGCCAGTTCCACTTTAGGCTTACTGTAAAACCCTATGACAAGCTGATGCTATGGCTGGAGTTTCTCTTGGCTGGGATGATGGCTTGGATCCAGCAAAAGGCCTAGGGCGTTGATAACTTCACAAAGCtttacaatttttatttatttattatttgtattttgtattcaaGAGTTAAAGATTGTGCATTTTATTAATAAACAAAGTGCACTTTTTTTCTGGGGGGGGCAGCATCATGAATGTAAAGCTTGGTTTTGTTTATTAGTTTCTTCATTTATTCAGTGATATGTTATTTTTTTTCTGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885033 lncRNA upstream 110 63115079 ~ 63115647 (+) True G1647437
TU1884974 lncRNA upstream 38614 63075149 ~ 63077143 (+) False G1647411
TU1884957 lncRNA upstream 67038 63048226 ~ 63048719 (+) True G1647397
TU1884868 lncRNA upstream 72840 63040806 ~ 63042917 (+) True LOC100136022
TU1884906 lncRNA upstream 184754 62930573 ~ 62931003 (+) True G1647349
TU1885029 lncRNA downstream 4936 63121767 ~ 63124124 (+) True G1647433
TU1885076 lncRNA downstream 85925 63202756 ~ 63204057 (+) True G1647477
TU1884987 lncRNA downstream 116608 63233439 ~ 63235440 (+) True G1647419
TU1885085 lncRNA downstream 121810 63238641 ~ 63238900 (+) True G1647485
TU1885087 lncRNA downstream 126083 63242914 ~ 63243254 (+) True G1647487
XM_036955349.1 mRNA upstream 12713 63050817 ~ 63103044 (+) True map3k9
XM_036955347.1 mRNA upstream 74851 62885583 ~ 63040906 (+) False LOC100136022
XM_036955348.1 mRNA upstream 74851 62885583 ~ 63040906 (+) False LOC100136022
XM_036955345.1 mRNA upstream 343801 62696384 ~ 62771956 (+) False LOC110512290
XM_021574931.2 mRNA downstream 24592 63141423 ~ 63152629 (+) True med6
XM_036955352.1 mRNA downstream 36522 63153353 ~ 63232158 (+) False pcnx1
XR_005037831.1 mRNA downstream 36522 63153353 ~ 63232158 (+) False pcnx1
XM_036955351.1 mRNA downstream 36523 63153354 ~ 63232158 (+) True pcnx1
XM_036955353.1 mRNA downstream 131791 63248622 ~ 63286935 (+) False LOC110498282
TU1884975 other upstream 38614 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 97069 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 622038 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 970467 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 1554673 61558041 ~ 61561084 (+) True G1646294
TU1885075 other downstream 85925 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 274794 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 1011377 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1863533 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 2344942 65461773 ~ 65463454 (+) True G1649268

Expression Profile