G1647419


Basic Information

Item Value
gene id G1647419
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63233439 ~ 63235440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1884987
acgTTAATAATGATGCCGTGGACGATGCAGtaaaaccacccagacacatcaaagatacagTCTTCCTTCTGAACTGAGGTACAGGACAAGGATGTTACCATGGTGATTGGATGTTACCACAAATGGCTGTGACGGGATGAAAACAAAAGAGgttggatcaacattgtagtggACTCCACAATAATGATTTAAATAACAGTGACAAGAATGCAAAATATACATCTGGTATGCAGCAGAGCAGGAGAAATGGggcggcaaggtagcctagtggttaagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaaggtagttaacccgctgttcctaggccatcaatgaaaataagactttgttcttaactagttaaataaaggtaaaattaattttaaaaaaagagAACTGCACAGAAATATACTAAACTCAAAGCCTTCTGTTTGGAGAAaatacaacatacaacacaaaGTCCTTATATTCAAGCAtgctggtggctgcatcatgttatgggtgtgcttgacatcggcaaataCTGAGgaggttttcaggataaaaagaaactaGCTGGAGCAAAGCACGGTCAAAATcctttcagtctgctttccacccgACACTGAGAGATGATTTCACCTATTCAGAAGGACATTAACCTaaaaaaacacaaggccaaatctacactggagttgcttatcaaggAGGCTGGGAATGTTCCTGAggggctgagttacagttttgatttaaatctgcttgaaaatctatggcaagacttgaaaaggtctgtctagccatgatccccaacaccttgacagagcttgaagaattttgaaaagaataatgggtaaTTATGGGAACAATCACggtttgcaaagctcttagagacttacccaagaagactcacagatGTAACTGCTGCCAAAAGGGGtttataacatgtattgactcagggagctgaataATTATGCAgtcttaaatttaaaaaaataataattaaaataaaatcCACGTTGACAGAAAagtacaattaaatcaattttaattccactttgtgaaacaataaaatgaatagttttgcaaggcactgtttcTGCCTTGCTCTGTGTCACAGCATATTACATGACAGTAACCCTGTTAAGTGGCTACCAATGGTAATTCTTCTTTTTTTCTATGCATTTCCTTATTACTTTGACTGACTTGTGTACACAGactgtgcacaaacacacacacaacgtgatatatatatatatatatatatatatatatacacacatatgtgCACAAATTAATGATGACGGTTTGATTTATGATTATGACAGAATTGAGTGTGAGGAAGTTATGGTTGGTTTCAAAATCATTTTTCCAAACGAGCCTGGTCCTGAAAGTGGGCGTGGTTTCACGTGTCGTTGCCAAGACTacagagagagtagtagtagtagtagaccagGAGGGAAGACATGCAGGTGCTGTACCAGACATGATTTACTTTTTGTCCTCATTTGTCATTCTTATTGGTTTTGTTTTGGAAGTTGCAGGAAATAACTTGCACTatgatttttttatatttttattttatttacagtgACGCACTACAGTCTGAGATATCACCTTATTGAATTTATTACAGAATCTTAGTGGCCATGGTTACCGATGCCTTGGGAATTTAAACTAATGGTTCGTCATTGTTTATTATTTCAGCCATTTTcgtttatatatatatcaatgtacaaaatatttttgtttttaatatttATTACTGTGAACATAGTATTTACATTTTCTtactttttttttcatttatgGGACAAATGTTATATAAATGTATCACGGACCATCGGTTGGAAAAACGAGATGGTGAATTTCTGATGGACTGTTTCCCGATTTAACTTAATTCTTTTTCTATATGGAGAAATAAAAAGCGTTTGATTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1884987 True 1972 lncRNA 0.36 2 63233439 63235440

Neighbor

gene id symbol gene type direction distance location
pcnx1 pcnx1 coding upstream 1281 63153353 ~ 63232158 (+)
med6 med6 coding upstream 80810 63141423 ~ 63152629 (+)
map3k9 map3k9 coding upstream 130395 63050817 ~ 63103044 (+)
LOC100136022 NA coding upstream 192533 62885583 ~ 63042917 (+)
LOC110512290 LOC106600942 coding upstream 461483 62655733 ~ 62771956 (+)
LOC110498282 NA coding downstream 13182 63248622 ~ 63287372 (+)
LOC110498284 chp1 coding downstream 57129 63292569 ~ 63309243 (+)
LOC118941523 NA coding downstream 73908 63309348 ~ 63310641 (+)
LOC110498285 NA coding downstream 77435 63312561 ~ 63320421 (+)
LOC110498286 NA coding downstream 104345 63339785 ~ 63346292 (+)
G1647477 NA non-coding upstream 29382 63202756 ~ 63204057 (+)
G1647433 NA non-coding upstream 109315 63121767 ~ 63124124 (+)
G1647431 NA non-coding upstream 116608 63115757 ~ 63116831 (+)
G1647437 NA non-coding upstream 117792 63115079 ~ 63115647 (+)
G1647411 NA non-coding upstream 156296 63075149 ~ 63077143 (+)
G1647485 NA non-coding downstream 3201 63238641 ~ 63238900 (+)
G1647487 NA non-coding downstream 7474 63242914 ~ 63243254 (+)
G1647429 NA non-coding downstream 53384 63288824 ~ 63289248 (+)
G1647442 NA non-coding downstream 59719 63295159 ~ 63296728 (+)
G1647502 NA non-coding downstream 66471 63301911 ~ 63302540 (+)
G1647342 NA other upstream 214751 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 739720 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1088149 62144183 ~ 62145290 (+)
LOC110498409 LOC106592792 other downstream 156185 63380908 ~ 63414582 (+)
G1648296 NA other downstream 892768 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1744924 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2226333 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2308937 65544377 ~ 65545055 (+)

Expression


Co-expression Network