LOC110498284 (chp1)


Basic Information

Item Value
gene id LOC110498284
gene name chp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63292569 ~ 63309243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955356.1
cctgacctctCCACAGTGCTGAGCAGAGCAAACTGACAGTTCTCCGGTCAGCTGTTTCACAGGCTAACTCGGAATAATTCTTTTTAAAAACGATTACAAGGAAATTATTAACGGTAGACAATTGGATTCAACGTAGACTACCGAAACGTTGCGACATTTGCTAGCTTGCTTCGTGTATAtccagtttttttttctctctgtctctctcttccgctAGTTAGCACGAATCAGCAAACGTTAGCTAACAAATCTCTTCGAAACCTGCGGCGAACAACTTGTTAGCGTAACTAgggattttttaaattgtattattatttttttgtagctTTTGTTGTGAAGGAAGGACTTTACAATGGGATCCAGAGCATCGACAttactgagagaagaggagattgaAGAAATCAAAAAGGAGACCGGCTTTTCCCACAGCCAGATCACCCGGCTCTACAGTCGCTTCACCAGCTTGGACAAAGGAGAGAACGGCACACTCAGTCGGGAAGATTTCCAACGGATCCCAGAGTTGGCCATCAACCCTCTGGGAGACAGAATCATCAATGCCTTCTTTCCCGAGGGGGAGGACCAGGTGAACTTCAGGGGCTTCATGAGAACTCTGGCTCACTTCCGTCCCATAGAAGACAATGAGAAGAACAAGGACCCCACTGCCTCTGAACCTCTCAACAGCAGGACCAATAAGCTGCTCTTTGCTTTCCAGCTGTACGACCTGGACAGAGATGATAAGATCTCCCGTGACGAGCTGCTACAGGTTCTTAGGATGATGGTTGGTGTGAACATCTCTGACGAGCAGCTGGGCAGCATCGCTGATAGGACCATCCAGGAGGCCGACCAGAACGGAGACAACTCCATTTCCTTTAATGAGTTCATCAAGGTTCTGGAGAAGGTAGATGTTGAACAGAAGATGAGCATCCGCTTCCTGCACTGAGACACTGATTGGTTGCACTTTCTGACAGGACTGTCTCTCTGATTGGCTGGATAttttactaccaccaccatgcccGCTGGAACATGACCTAAgctgtgtctccctgtctcctcctccatacagtactagcccctccctctctctgtctcctcctccatacagtaacagcccctccctctctgtctcctcctcctccatacagtactagcccctccctc

Function

symbol description
chp1 Predicted to enable calcium ion binding activity. Is expressed in pronephric duct and pronephros. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1).

NR:

description
calcineurin B homologous protein 1-like

GO: NA

KEGG:

id description
K17610 CHP, CHP1; calcineurin B homologous protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955356.1 True 1158 mRNA 0.48 7 63292569 63309243

Neighbor

gene id symbol gene type direction distance location
LOC110498282 NA coding upstream 5197 63248622 ~ 63287372 (+)
pcnx1 pcnx1 coding upstream 60411 63153353 ~ 63232158 (+)
med6 med6 coding upstream 139940 63141423 ~ 63152629 (+)
map3k9 map3k9 coding upstream 189525 63050817 ~ 63103044 (+)
LOC100136022 NA coding upstream 251663 62885583 ~ 63042917 (+)
LOC118941523 NA coding downstream 105 63309348 ~ 63310641 (+)
LOC110498285 NA coding downstream 3632 63312561 ~ 63320421 (+)
LOC110498286 NA coding downstream 30542 63339785 ~ 63346292 (+)
rtf1 rtf1 coding downstream 39706 63348949 ~ 63372335 (+)
LOC110498409 LOC106592792 coding downstream 71665 63380908 ~ 63414582 (+)
G1647429 NA non-coding upstream 3321 63288824 ~ 63289248 (+)
G1647487 NA non-coding upstream 49315 63242914 ~ 63243254 (+)
G1647485 NA non-coding upstream 53669 63238641 ~ 63238900 (+)
G1647419 NA non-coding upstream 57129 63233439 ~ 63235440 (+)
G1647477 NA non-coding upstream 88512 63202756 ~ 63204057 (+)
G1647422 NA non-coding downstream 1714 63310957 ~ 63380175 (+)
G1647421 NA non-coding downstream 13051 63322294 ~ 63329656 (+)
G1647504 NA non-coding downstream 20901 63330144 ~ 63334539 (+)
G1647507 NA non-coding downstream 28822 63338065 ~ 63338328 (+)
G1647411 NA other upstream 215426 63075149 ~ 63077143 (+)
G1647342 NA other upstream 273881 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 798850 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1147279 62144183 ~ 62145290 (+)
G1648296 NA other downstream 818965 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1671121 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2152530 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2235134 65544377 ~ 65545055 (+)

Expression


Co-expression Network