G1647504


Basic Information

Item Value
gene id G1647504
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63330144 ~ 63334539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885106
GTCTGATTccgtatcagcaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactatccctcagtctgattcagtataaacaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactatacctcagtctgattcagtatcagcaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatacctcagtctgattcagtatcagcaggccctggtgaggagaactatccctcagtctgattcagtatcaacaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactatacctcagtctgattcagtatcagcaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatccctcagtctgattcagtatcaacaggccctggtgaggagaactatccctcagtctgattcagtatcaacaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggcccaggccctggtgaggagaactatccctcagtctgattcagtatcaacaggccctggtgaggagaactatccctcagtctgattcagtatcaacaggccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactatacctcagtctgattcagtatcagcaggccctggtgaggagagcTATCTGTCAGGCAAAGAGGTCATGTTGGTGTCAGTTCTGTGACACCACCTGTGGGAGAAGTGTGGGGGATGCTTAAGAGGATGAGTGGGGTCAGAAGGGAGTGGGAAGTATGTGGCAGTAACAGATGAGGAGAAGGCAGAGATGATGGCCAAAGTGTTTGTCCAAGTGAATAGCTCTGCAAATTTGTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885106 True 1426 lncRNA 0.52 2 63330144 63334539

Neighbor

gene id symbol gene type direction distance location
LOC110498285 NA coding upstream 13328 63312561 ~ 63320421 (+)
LOC118941523 NA coding upstream 19503 63309348 ~ 63310641 (+)
LOC110498284 chp1 coding upstream 20901 63292569 ~ 63309243 (+)
LOC110498282 NA coding upstream 42772 63248622 ~ 63287372 (+)
pcnx1 pcnx1 coding upstream 97986 63153353 ~ 63232158 (+)
LOC110498286 NA coding downstream 5246 63339785 ~ 63346292 (+)
rtf1 rtf1 coding downstream 14410 63348949 ~ 63372335 (+)
LOC110498409 LOC106592792 coding downstream 46369 63380908 ~ 63414582 (+)
fbln5 fbln5 coding downstream 100785 63435324 ~ 63500172 (+)
LOC110498294 LOC106599381 coding downstream 172247 63506786 ~ 63534703 (+)
G1647421 NA non-coding upstream 488 63322294 ~ 63329656 (+)
G1647502 NA non-coding upstream 27604 63301911 ~ 63302540 (+)
G1647442 NA non-coding upstream 33416 63295159 ~ 63296728 (+)
G1647429 NA non-coding upstream 40896 63288824 ~ 63289248 (+)
G1647507 NA non-coding downstream 3526 63338065 ~ 63338328 (+)
G1647510 NA non-coding downstream 19575 63354114 ~ 63355784 (+)
G1647511 NA non-coding downstream 19798 63354337 ~ 63354801 (+)
G1647524 NA non-coding downstream 59516 63394055 ~ 63394273 (+)
G1647477 NA other upstream 126087 63202756 ~ 63204057 (+)
G1647411 NA other upstream 253001 63075149 ~ 63077143 (+)
G1647342 NA other upstream 311456 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 836425 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1184854 62144183 ~ 62145290 (+)
G1648296 NA other downstream 793669 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1645825 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2127234 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2209838 65544377 ~ 65545055 (+)

Expression


Co-expression Network