G1647442


Basic Information

Item Value
gene id G1647442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63295159 ~ 63296728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1885038
ATCGATATTTGACTCgtatcattaaaaaaatatatatatatatattttgcaacTGTAGGTAGTGTTATCCAAAACTCAGCTATTTTtaatcctatagcttgttctcagTCATTTTAAATAGGGGGGGCTTTTTTCAGCACTTATTCCCTTATTTTCGTTTTCTTACGCTCTTGTCTCTCTACAGCAGATATAGTGAggaatatgtttggaacatcaaatcacagtatcgaatcgaaTCAAATTCATATAGAATCagaatacatgtagaatcacacttcatatagaatcacactattcatggagaatcacactattcatggagaatcacactattcatatagaatcacactattcatatagaatcacactattcatatagaatcacactattcatatagaatcacactattcatatagaatcacactattcatatagaatcacacttcatatagaatcacactattcatatagaatcacacttcata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1885038 True 486 lncRNA 0.30 3 63295159 63296728

Neighbor

gene id symbol gene type direction distance location
LOC110498282 NA coding upstream 7787 63248622 ~ 63287372 (+)
pcnx1 pcnx1 coding upstream 63001 63153353 ~ 63232158 (+)
med6 med6 coding upstream 142530 63141423 ~ 63152629 (+)
map3k9 map3k9 coding upstream 192115 63050817 ~ 63103044 (+)
LOC100136022 NA coding upstream 254253 62885583 ~ 63042917 (+)
LOC118941523 NA coding downstream 12620 63309348 ~ 63310641 (+)
LOC110498285 NA coding downstream 16147 63312561 ~ 63320421 (+)
LOC110498286 NA coding downstream 43057 63339785 ~ 63346292 (+)
rtf1 rtf1 coding downstream 52221 63348949 ~ 63372335 (+)
LOC110498409 LOC106592792 coding downstream 84180 63380908 ~ 63414582 (+)
G1647429 NA non-coding upstream 5911 63288824 ~ 63289248 (+)
G1647487 NA non-coding upstream 51905 63242914 ~ 63243254 (+)
G1647485 NA non-coding upstream 56259 63238641 ~ 63238900 (+)
G1647419 NA non-coding upstream 59719 63233439 ~ 63235440 (+)
G1647477 NA non-coding upstream 91102 63202756 ~ 63204057 (+)
G1647502 NA non-coding downstream 5183 63301911 ~ 63302540 (+)
G1647422 NA non-coding downstream 14229 63310957 ~ 63380175 (+)
G1647421 NA non-coding downstream 25566 63322294 ~ 63329656 (+)
G1647504 NA non-coding downstream 33416 63330144 ~ 63334539 (+)
G1647411 NA other upstream 218016 63075149 ~ 63077143 (+)
G1647342 NA other upstream 276471 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 801440 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1149869 62144183 ~ 62145290 (+)
G1648296 NA other downstream 831480 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1683636 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2165045 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2247649 65544377 ~ 65545055 (+)

Expression


Co-expression Network