G1647421


Basic Information

Item Value
gene id G1647421
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63322294 ~ 63329656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1884992
cactgttcccctgaacaaggcagttaacccattgttcccctgaacaaggcagttaacccattgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagtttaacccactgttcctaggccgtcattgaaaataagaatttgtttctcaactgacttgcctagtttaaaaaaaaaaaataaggaaacATTGTTTTCTAAAAACAGAACATGTTTGGGAGATTTGATTCAATTGTTAAATTCTATTCAGAGTGAATTTCACCACAGGTATACAGTTATCTATTACTATCTAAACTGTATTTTATGGAATGAACACCTTCAGAATCAGACATATTGACATCCAGTGTGttaacacaggcagcccaattctgatctttttttccactaattggtctttttgaccaatcagatcggctcttttgccactaattggtctttttgGCCAATCAGATCGGCTCTtttgccactaattggtctttttgGCCAATCAGATCggctcttttgccaataattaGACAACATATTAGAGTTGTGCTTCCTGTGGAAACAGCCTATCGTAATTGATCAATAAAATAACGATCTAGAAAATGAGAATATATTTAGTTTAAAAGCAAGACATCTAGACATTTCAgaagaaaataaaacaattctGCATGATTTTCCAGTTTGTTTGATCTATTGTAATCTCTGTTTTTTTAAAGGAATGTTTAGCATATTAGAAGCTATATAATGTAATGTTTGTTTAGAGGGAAGACTATGGTGTATACTGTGGTTTAGGAGGACGTTTGTTCCTCGTAAGAAACACCCAACAGGGCGCGAAGTACCACATGTTGAAACCGAACGACTCACATTTGAATTGGCAAAACGGTCTTCTGGGGAAATTCAATATTCAAGCTACGTTCCCTATGgtactagtgcactactttttgaccgggggggaccatagggctctagtacaaagtagtgcactatgtagggaatagggtgtcattttgggaAGTAGCCTCGGACTCGTACAGTATCATTCTGTAAGAACTAAGGACCCACTGATTTAGGAGGCCTGTGTTGATGCCTCTTTTCACAGTTTCCATTCTGTTCAAATGTTGCACCGTTGTCCATATCAATCGAACTATGTATGCATGTATACATGTGAATTATTATGCATCCTTCCTATTAATAGAGCTGCCTCAAGGAGAAACgactgaacaaaaaaaaaaaaaataataataattatgctgtAAACCTTTCTTGACATGTATGAACTAATTCACTACCATCATCCTGTCTTGAAtactgtgtttaaaaaaaatatatataaaaaaaaaattgtaacgcTACATAATGTGGCAATGCTTAGGAAAAGATCAATCTAGAATGTATCGATCATTTAAAACTATATTAAATGCGAGGAGAAAATATTATGCATGACTTAAAAGTAATCAATGATTTGTATCGCGGGCAATAATCAACTTGGTCCATTTGCGTTGATCATTAGATCTGTGATACTGAAAGGTTGACATTGTGGCGCTGTGATATACGGTAGTAATACGTTTTACAGGTCTTGAATAACAGGGGACGGTTGTTGACATCACCCTGAGCACATTGTTTTGATAAAAAGAATGTACGATGTTGATCAACAGCCTGAAATCCAGGCTGTTTGCGCTATCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTAGCATTCTACTAGCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTAATGACAAGGAGTGGCATGATGGGCCTAAAGACTGGATTTCAGGCTGTTGATCCAAGTACTACTAGTAAACAAACAGAATGAGTTGACTGTGCGTTGTGGTGTGACTATGCAGTCCAGCGAGAGGCCCTGGGGCATTGCTGGAGCAACGGAGTCTCCCGTCTCGGTTGTGGAATTAACTGAAGAAATGTGCATCAGAAATGTAGCAATAAAAAACAGCATGGTGCCAATAGCACA
>TU1884993
cactgttcccctgaacaaggcagttaacccattgttcccctgaacaaggcagttaacccattgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagtttaacccactgttcctaggccgtcattgaaaataagaatttgtttctcaactgacttgcctagtttaaaaaaaaaaaataaggaaacATTGTTTTCTAAAAACAGAACATGTTTGGGAGATTTGATTCAATTGTTAAATTCTATTCAGAGTGAATTTCACCACAGGTATACAGTTATCTATTACTATCTAAACTGTATTTTATGGAATGAACACCTTCAGAATCAGACATATTGACATCCAGTGTGttaacacaggcagcccaattctgatctttttttccactaattggtctttttgaccaatcagatcggctcttttgccactaattggtctttttgGCCAATCAGATCGGCTCTtttgccactaattggtctttttgGCCAATCAGATCggctcttttgccaataattaGACAACATATTAGAGTTGTGCTTCCTGTGGAAACAGCCTATCGTAATTGATCAATAAAATAACGATCTAGAAAATGAGAATATATTTAGTTTAAAAGCAAGACATCTAGACATTTCAgaagaaaataaaacaattctGCATGATTTTCCAGTTTGTTTGATCTATTGTAATCTCTGTTTTTTTAAAGGAATGTTTAGCATATTAGAAGCTATATAATGTAATGTTTGTTTAGAGGGAAGACTATGGTGTATACTGTGGTTTAGGAGGACGTTTGTTCCTCGTAAGAAACACCCAACAGGGCGCGAAGTACCACATGTTGAAACCGAACGACTCACATTTGAATTGGCAAAACGGTCTTCTGGGGAAATTCAATATTCAAGCTACGTTCCCTATGgtactagtgcactactttttgaccgggggggaccatagggctctagtacaaagtagtgcactatgtagggaatagggtgtcattttgggaAGTAGCCTCGGACTCGTACAGTATCATTCTGTAAGAACTAAGGACCCACTGATTTAGGAGGCCTGTGTTGATGCCTCTTTTCACAGTTTCCATTCTGTTCAAATGTTGCACCGTTGTCCATATCAATCGAACTATGTATGCATGTATACATGTGAATTATTATGCATCCTTCCTATTAATAGAGCTGCCTCAAGGAGAAACgactgaacaaaaaaaaaaaaaATGTATGAACTAATTCACTACCATCATCCTGTCTTGAAtactgtgtttaaaaaaaatatatataaaaaaaaaattgtaacgcTACATAATGTGGCAATGCTTAGGAAAAGATCAATCTAGAATGTATCGATCATTTAAAACTATATTAAATGCGAGGAGAAAATATTATGCATGACTTAAAAGTAATCAATGATTTGTATCGCGGGCAATAATCAACTTGGTCCATTTGCGTTGATCATTAGATCTGTGATACTGAAAGGTTGACATTGTGGCGCTGTGATATACGGTAGTAATACGTTTTACAGGTCTTGAATAACAGGGGACGGTTGTTGACATCACCCTGAGCACATTGTTTTGATAAAAAGAATGTACGATGTTGATCAACAGCCTGAAATCCAGGCTGTTTGCGCTATCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTAGCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTAATGACAAGGAGTGGCATGATGGGCCTAAAGACTGGATTTCAGGCTGTTGATCCAAGTACTACTAGTAAACAAACAGAATGAGTTGACTGTGCGTTGTGGTGTGACTATGCAGTCCAGCGAGAGGCCCTGGGGCATTGCTGGAGCAACGGAGTCTCCCGTCTCGGTTGTGGAATTAACTGAAGAAATGTGCATCAGAAATGTAGCAATAAAAAACAGCATGGTGCCAATAGCACA

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1884992 False 2187 lncRNA 0.37 2 63322294 63329656
TU1884993 True 2198 lncRNA 0.37 3 63322294 63329656

Neighbor

gene id symbol gene type direction distance location
LOC110498285 NA coding upstream 5478 63312561 ~ 63320421 (+)
LOC118941523 NA coding upstream 11653 63309348 ~ 63310641 (+)
LOC110498284 chp1 coding upstream 13051 63292569 ~ 63309243 (+)
LOC110498282 NA coding upstream 34922 63248622 ~ 63287372 (+)
pcnx1 pcnx1 coding upstream 90136 63153353 ~ 63232158 (+)
LOC110498286 NA coding downstream 10129 63339785 ~ 63346292 (+)
rtf1 rtf1 coding downstream 19293 63348949 ~ 63372335 (+)
LOC110498409 LOC106592792 coding downstream 51252 63380908 ~ 63414582 (+)
fbln5 fbln5 coding downstream 105668 63435324 ~ 63500172 (+)
LOC110498294 LOC106599381 coding downstream 177130 63506786 ~ 63534703 (+)
G1647502 NA non-coding upstream 19754 63301911 ~ 63302540 (+)
G1647442 NA non-coding upstream 25566 63295159 ~ 63296728 (+)
G1647429 NA non-coding upstream 33046 63288824 ~ 63289248 (+)
G1647487 NA non-coding upstream 79040 63242914 ~ 63243254 (+)
G1647504 NA non-coding downstream 488 63330144 ~ 63334539 (+)
G1647507 NA non-coding downstream 8409 63338065 ~ 63338328 (+)
G1647510 NA non-coding downstream 24458 63354114 ~ 63355784 (+)
G1647511 NA non-coding downstream 24681 63354337 ~ 63354801 (+)
G1647477 NA other upstream 118237 63202756 ~ 63204057 (+)
G1647411 NA other upstream 245151 63075149 ~ 63077143 (+)
G1647342 NA other upstream 303606 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 828575 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1177004 62144183 ~ 62145290 (+)
G1648296 NA other downstream 798552 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1650708 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2132117 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2214721 65544377 ~ 65545055 (+)

Expression


Co-expression Network