LOC118941523


Basic Information

Item Value
gene id LOC118941523
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63309348 ~ 63310641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037832.1
atacagtactagcccctccctctctctgtctcctcctccatacagtactagcccctccctctctctgacccctcctcctccatacagtactagcccctccctctctctgtctcctccaccaTACAGTACTATCTCCTCCACCATACAGTActagcccctccctctctctgtctcttcctccaccATACAGTACTAtcccctctctctgacccctcctccatacagtactatcccctctctctgacccctccaTACAGTAttagcccctccctctctctgacccctcctcctccatacagcacTAGCCCCTCCCTCTgtgacccctcctcctccatacagtactagcccttccctctctctgaccATCCTCCTCCATACAGTACTAGCCCCTCCCTCtctgacccctcctcctccatacagtaCTATCCCCTCCACCATACAGTACTATCCCCTCTGtctgacccctcctcctcctccatacagtaCTATGCTCTTTTGCTGACCAAGGATTTGTTAGATAAGATAACATTTTTATAGTTTGTATTATTTAGTCTCTTGTCTGTTCTGCCTTGCACCGCTCTGTGTAAACTAAAGGGAGGTACTTGCGTGCCTTGGGTTGCTTTATGTTGTTGTCACGACTACGGCTTCTCTCTCAGAGATGGAACCTTATGGTTTAGACCACTCCTTGTTGGAAGTAGACCTGTGGTTATTACCAAGGCTCTGCGTTTATACCACCTTTCCACCTGTTTGTTAGATGTCGTTCCATGTAATGGTAACGGTATCTTTGTTATTGTGATGTATTGTTAGCCAGGGCAGAACAGGCCAAATTTAGCCTCTTATTTAAACTAACTTATCAATTCCATGATGATGAAAACATGTTGCTGTTTTCTTCGTCATTATGAATATGCAGATATATGACAGGAACATGCATGGGGGTTGTTAACGCTAACGAGAATCGATGTCCCTTCCTCTTCACTGAGCTACGACTTGTTTTTCTAAAAACGAGGCCGCTTCCTGAAAGGCACTCTCTCTTCCTTATAACGGAGAATTCATTTTGACTGGGTGCCATAGGattcccacagggctctggtcgacAGGagagtgcactatgtagggaatagggtgccatttgggacagtccCCTGAGCTGCCTCAGTCTCTGGCAATTGGAGCTTGGCGTCTCTCACtattaatatacacacacactatttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037832.1 True 1216 mRNA 0.48 2 63309348 63310641

Neighbor

gene id symbol gene type direction distance location
LOC110498284 chp1 coding upstream 105 63292569 ~ 63309243 (+)
LOC110498282 NA coding upstream 21976 63248622 ~ 63287372 (+)
pcnx1 pcnx1 coding upstream 77190 63153353 ~ 63232158 (+)
med6 med6 coding upstream 156719 63141423 ~ 63152629 (+)
map3k9 map3k9 coding upstream 206304 63050817 ~ 63103044 (+)
LOC110498285 NA coding downstream 2234 63312561 ~ 63320421 (+)
LOC110498286 NA coding downstream 29144 63339785 ~ 63346292 (+)
rtf1 rtf1 coding downstream 38308 63348949 ~ 63372335 (+)
LOC110498409 LOC106592792 coding downstream 70267 63380908 ~ 63414582 (+)
fbln5 fbln5 coding downstream 124683 63435324 ~ 63500172 (+)
G1647502 NA non-coding upstream 6808 63301911 ~ 63302540 (+)
G1647442 NA non-coding upstream 12620 63295159 ~ 63296728 (+)
G1647429 NA non-coding upstream 20100 63288824 ~ 63289248 (+)
G1647487 NA non-coding upstream 66094 63242914 ~ 63243254 (+)
G1647485 NA non-coding upstream 70448 63238641 ~ 63238900 (+)
G1647422 NA non-coding downstream 316 63310957 ~ 63380175 (+)
G1647421 NA non-coding downstream 11653 63322294 ~ 63329656 (+)
G1647504 NA non-coding downstream 19503 63330144 ~ 63334539 (+)
G1647507 NA non-coding downstream 27424 63338065 ~ 63338328 (+)
G1647477 NA other upstream 105291 63202756 ~ 63204057 (+)
G1647411 NA other upstream 232205 63075149 ~ 63077143 (+)
G1647342 NA other upstream 290660 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 815629 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1164058 62144183 ~ 62145290 (+)
G1648296 NA other downstream 817567 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1669723 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2151132 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2233736 65544377 ~ 65545055 (+)

Expression


Co-expression Network