LOC110498285


Basic Information

Item Value
gene id LOC110498285
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63312561 ~ 63320421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469814.2
TTAGAAACTCTGTGTTATCAAGGACTCCATATTAACTTCTCCATTGGATTGGTCGAACAGTGCAAAATAAAACCTCCCCCTACAGTTTTCTCTCTCGTCAACACCAGTATGCGGGCAATCTAGTTTCagacgttttttatttttttaagataATTACAGTATTTTTAATGGGAGGAAAATTGAGGGGAGGGCTTTAGGATTTGTGTGACAGTTCAACAGCGCAATCTCCGTACAGGGCAGTCAGACGGCTGGGGGCAAAAAAATCGTAGAACTGGTTCTCGTAAGAGCTCGCAAGGGGGTGTCAAATACggacattgcccccccccccccgggaatATAGCATTTACTGATGATGTTGGTGTCTTTGAAGAGTTTCTGCTGCCTCTCCAGCTTCTAGACAAGATCATCTCTGACAGTGCAACAACCTGTCCAGCATTTGACAAAGATGCGAAGTGAACGAGTGCCAGACTTTGTGGGGAAATGTCCAGACCGCAGCTCTTCACGTGAGACACATCCAGATTTGGGGTAACATCTCCCAATTGTCACGCCCAGCTGTTCAGACCAGAGATGGATCAAGAGCTCAACCTCTGCCACTATTTCGGCAGAGAACAGACAGTGGACTAAACTCCAGGGATGTATGGGGATACAGGAGAGACTGGCAACTACAGACAGCTCCAGGCTGGAcctgtctgtcccctctctctctctctctctcctctatcctcatcTTTCTGTCCCCTCCATTGCTTGTagacgacgacgacgacgatgATATCTGTCAAGTCTTGTCCTGTTATTTTCATAACTAGGCATCGAACAGAACATATGTCGGCTAGTTGGTGGAATCATCCCCAGAATTGGTTTCATTTGCATTTAAAGTTATTCACAGACATCTCGGTAGGTTTTTTTTTCCCCTCCTGAAATGGAGGATCTCTGTTCTACTGCCTTTTTTTAGTAACCCAATAATCACCCTTTTGTCTGAACCAAGCAATTTACCATTATAATGAACAAAGTATAGGTCTAGTTTCAGATGTGCTGTGGACAGTgagtttgttgttgttctgaaaggcctcGTTCCCAACCTTCAACAACGGAGTAAAACATAGTAGATGTTGCAAACTG
>TU1885023
ACGTCATTGGGTCTAACGGTCCTATATATCgccgaactgcgcatgtgcatgACGTCAAATCAAAAGGCACTCCTGTATaaaaattttttatttttttttaacgaaAATGCAAACTTGTCCGTTTTTTTATGCTTGTTTTACcttcacgaggttggagtaataacacgTTGAACTACGTATAAGACATTGGCTCGGATGTAGGTTGTTCCTTTTAGTTGTCGAAGGAAGAATtattcacttctctcattgacaaacaccggtctggtctgtttcgcaaGCGTTCCCGGAAGTACCGCGATGTTGTGCCTCTGGCTTTAGAAACTCTGTGTTATCAAGGACTCCATATTAACTTCTCCATTGGATTGGTCGAACAGTGCAAAATAAAACCTCCCCCTACAGTTTTCTCTCTCGTCAACACCAGTATGCGGGCAATCTAGTTTCagacgttttttatttttttaagataATTACAGTATTTTTAATGGGAGGAAAATTGAGGGGAGGGCTTTAGGATTTGTGTGACAGTTCAACAGCGCAATCTCCGTACAGGGCAGTCAGACGGCTGGGGGCAAAAAAATCGTAGAACTGGTTCTCGTAAGAGCTCGCAAGGGGGTGTCAAATACggacattgcccccccccccccgggaatATAGCATTTACTGATGATGTTGGTGTCTTTGAAGAGTTTCTGCTGCCTCTCCAGCTTCTAGACAAGATCATCTCTGACAGTGCAACAACCTGTCCAGCATTTGACAAAGATGCGAAGTGAACGAGTGCCAGACTTTGTGGGGAAATGTCCAGACCGCAGCTCTTCACGTGAGACACATCCAGATTTGGGGTAACATCTCCCAATTGTCACGCCCAGCTGTTCAGACCAGAGATGGATCAAGAGCTCAACCTCTGCCACTATTTCGGCAGAGAACAGACAGTGGACTAAACTCCAGGGATGTATGGGGATACAGGAGAGACTGGCAACTACAGACAGCTCCAGGCTGGAcctgtctgtcccctctctctctctctctctcctctatcctcatcTTTCTGTCCCCTCCATTGCTTGTagacgacgacgacgacgatgATATCTGTCAAGTCTTGTCCTGTTATTTTCATAACTAGGCATCGAACAGAACATATGTCGGCTAGTTGGTGGAATCATCCCCAGAATTGGTTTCATTTGCATTTAAAGTTATTCACAGACATCTCGGTAGGTTTTTTTTTCCCCTCCTGAAATGGAGGATCTCTGTTCTACTGCCTTTTTTTAGTAACCCAATAATCACCCTTTTGTCTGAACCAAGCAATTTACCATTATAATGAACAAAGTATAGGTCTAGTTTCAGATGTGCTGTGGACAGTgagtttgttgttgttctgaaaggcctcGTTCCCAACCTTCAACAACGGAGTAAAACATAGTAGATGTTGCAAACTGTATCAAAGATCTTGTCGCCTCCTAATGTCGCGTGTCAGACTTTACTGCTACAGAGCTGGTTTGTTCTAATATATTATACCAGACCTTGACtgaaaaactacaggacagtagatctccaggaagagggttgggctgaaaacctacaggacagtagatctccaggaagagggttggactgaaaacctacaggacagtagatctacaggaagagggttggactgaaaacctacaggacagtagatctacaggaagagggttggactgataacctacaggacagtagatctccaggaagagggttggactgaaaacctacaggacagtagatctccaggaagagggttggagtgaaaacctacaggacagtagatctccaggaagagggttgaactgaaaacctacaggacagtagatctccaggaagagggttggactgaaaacctacaggaccagtagatctccaggaagagggttgggctgccCTGTACCTTATCATACCAGATTCTGAGCCTCTCGTCTGGCTCCGTGAGATTAGATTAGTAGTCCCTCCCTCTTATGGTTGTTGATCTGTGGTGGAAAGAtgtttttattgctttacctcATTGCCATGTTTTGCACCAGGACAGTTGGTGCTTTTCTCTATGATATTAACCAGTGTGAAGACAACAACAGTACACTAACCCAGGTCCTAGAGTTCGAGGCAAATTAATATCGTTGTTTCCCTTAGACGAAGTAGGGACCATATAGCCCAACATAACATGCTGTACCAAAAGTGAAAAGACGCAATTCATTCTTACACCATATTGATTCATTCTTACACCATATTGATTCACTCGTACACCATATTGATTCATTCTTACACCATATTGATTCATTCTTACACCATATTGATTCATTCACTCTTACACCATATTGATTCATTCACTCTTACACCATATTGATTCATTCTTACACCATATTGATTCATTCATTCTTACACCATATTGATTCATTCTTACATACACCATATTGATTCATTCTTACATACACCATATTGATTCATTCTTTCACCACATTGATTCATTCTTTCACCACATTGATTCATTCTTACATACACCATATTGATTCATTCTTACATACACCATATTGATTCATTCTTACACCATATTGATTCATTCACTCATACACCATATTGATTCATTCTTTCACCATATTGATTCATTCGATAACCTTATCAGAGTTTGTATGAATGGCACAGAGTCACAGATTATGTTATTTTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGACCAGATTCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGACCAGATTCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGACCAGATTCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGACCAGATTCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACACACAGTCCTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGACCGGATCCCCAGACACACAGTCCTAGTTATAGGGCCGGATCCCCAGACAC

Function

NR:

description
PREDICTED: ice nucleation protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469814.2 False 1122 mRNA 0.45 3 63312875 63316816
TU1885023 True 3400 lncRNA 0.44 4 63312561 63320421

Neighbor

gene id symbol gene type direction distance location
LOC118941523 NA coding upstream 2234 63309348 ~ 63310641 (+)
LOC110498284 chp1 coding upstream 3632 63292569 ~ 63309243 (+)
LOC110498282 NA coding upstream 25503 63248622 ~ 63287372 (+)
pcnx1 pcnx1 coding upstream 80717 63153353 ~ 63232158 (+)
med6 med6 coding upstream 160246 63141423 ~ 63152629 (+)
LOC110498286 NA coding downstream 22969 63339785 ~ 63346292 (+)
rtf1 rtf1 coding downstream 32133 63348949 ~ 63372335 (+)
LOC110498409 LOC106592792 coding downstream 64092 63380908 ~ 63414582 (+)
fbln5 fbln5 coding downstream 118508 63435324 ~ 63500172 (+)
LOC110498294 LOC106599381 coding downstream 189970 63506786 ~ 63534703 (+)
G1647502 NA non-coding upstream 10335 63301911 ~ 63302540 (+)
G1647442 NA non-coding upstream 16147 63295159 ~ 63296728 (+)
G1647429 NA non-coding upstream 23627 63288824 ~ 63289248 (+)
G1647487 NA non-coding upstream 69621 63242914 ~ 63243254 (+)
G1647485 NA non-coding upstream 73975 63238641 ~ 63238900 (+)
G1647421 NA non-coding downstream 5478 63322294 ~ 63329656 (+)
G1647504 NA non-coding downstream 13328 63330144 ~ 63334539 (+)
G1647507 NA non-coding downstream 21249 63338065 ~ 63338328 (+)
G1647510 NA non-coding downstream 37298 63354114 ~ 63355784 (+)
G1647511 NA non-coding downstream 37521 63354337 ~ 63354801 (+)
G1647477 NA other upstream 108818 63202756 ~ 63204057 (+)
G1647411 NA other upstream 235732 63075149 ~ 63077143 (+)
G1647342 NA other upstream 294187 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 819156 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1167585 62144183 ~ 62145290 (+)
G1648296 NA other downstream 811392 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1663548 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2144957 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2227561 65544377 ~ 65545055 (+)

Expression


Co-expression Network