med6 (med6)


Basic Information

Item Value
gene id med6
gene name med6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63141423 ~ 63152629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574931.2
tgttttgaacgcgccATTAGACCTGACGCTGCTGAATACGTCATCCACCAGCGACAGACGCTTCTGTGCGACATTTGTTTACAGCACACGATGGCGTCGGTGGATTTGAGAGACAACAACCTCCTGGGGATATCGTGGGTTGATAGTGGCTGGGTGCCCATCCTCAACCCTGGCAATGTACTGGACTATTTCTCCGAGAGGAGTAATCCGTTCTACGACCGCACCTGTAACAACGAGGTGGTGAAGATGCAGCGGCTCACTCTGGAACATCTCAATCAGATGGTTGGAGTGGAGTACATTCTCCTTCATGCCCAGGAGCCCATCCTCTACAtcatcaggaaacagcagagacagTCTCCTACTCAGGTCATCCCTTTGTCTGACTACTACATTATAGCCGGAGTGGTGTATCAGGCTCCTGATCTGGGAACAGTTATTGGATCCAGAGTGCTGTCTGCTGTCCACGGTGTCCAGTCTGCCTTCGATGAGGCCATGTCGTACTGTCGCTATCACCCATCTAAAGGATACTGGTGGCACTTCAAAGACCAGGAGGAGAGAGATGCCAAAGCCAAGCCGAAGTCGAAGAAGAAAGAGGAACCCAGTTCCCTGTTCCAGAGGCAACGTGTTGACACACTTCTACTCGATTTGAGGTCCAAGTTTCCTCCCACGTTTTATCAGCCTAAGCCTGGTGAGAAGCCCATCCCAGTGGAGGTGAAGAAGGAGACTGAACCCCCTGTAGAGCTGgtgaaacaggaagagagagagagagagccagccacCAAGACCTCTGCTCCAGCTCCCCCCAGCAGCAAACCACCTCCAGAGAAACGTGCCAGGCTACAGTGATGAACGATGGCCACTCCTGTATATATTTCTGATTATGTCCATCCTTAAAAGAAAATAATaagaaaatgagaaaaaaaactcaCATTGCTCTTGCCAGTATCACCTTTTGTTAATTCTAGCTTATATGTGAGCCTCTTGGCCTTCGTCATGATGTCCATTCTCACTTTGGCACGGCACACTGAAAGGACATATGGGACAGGTACAACCCTATCTGACTGAACATGGCTAAGGAAGTGGTTTGTGTCTGATGGAAGGTGTGTGGAAATGGACCGACATCCCAGTTTCCAGACCAAACAGACCATAGCAACCCATCATCCTGTTTCTGACGGGCTTGGAATGGCATTAGGCAAATgaatagggtgccatttgagatgctggCATGAGCAGACATTATGAGTTGTCTGTCCCAGTACCAGACCTCGTGGGACATTCCATCCATGTTCTAGAACTGTCTAGTTACTGACAACATGTACATCTTACTATCGCCCCAAGATTTCTCTCTGTGATGACGCTAGAGGTGAGAGGTTAAGGACCCGAGTGGATTTGCAGTTTTTTTGAAGGTAACATGGAAACTGAGATCACCGGTAAATCTCTATGCACTGTTGACATCAGCAGTATCTTACTCAGTCGTGACTGTGGGGAGACTTGTTTTTTTTGGCGTTATCTCTGAAGCATAAATACACATCCACACAATTTATTTTTTCAATatgtaattgtttttttttccacGTCAAGTGATCCTGAATCCATTGTCTGCTttcattgaaaaaaaaatgtttcatgcttttctGAATATAATAATTTTCAAAAATTC

Function

symbol description
med6 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED6 (mediator complex subunit 6).

NR:

description
mediator of RNA polymerase II transcription subunit 6

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15128 MED6; mediator of RNA polymerase II transcription subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574931.2 True 1660 mRNA 0.47 9 63141423 63152629

Neighbor

gene id symbol gene type direction distance location
map3k9 map3k9 coding upstream 38379 63050817 ~ 63103044 (+)
LOC100136022 NA coding upstream 100517 62885583 ~ 63042917 (+)
LOC110512290 LOC106600942 coding upstream 369467 62655733 ~ 62771956 (+)
LOC110504278 LOC102780996 coding upstream 503297 62604904 ~ 62638126 (+)
LOC110504279 LOC106599953 coding upstream 538649 62500076 ~ 62602774 (+)
pcnx1 pcnx1 coding downstream 724 63153353 ~ 63232158 (+)
LOC110498282 NA coding downstream 95993 63248622 ~ 63287372 (+)
LOC110498284 chp1 coding downstream 139940 63292569 ~ 63309243 (+)
LOC118941523 NA coding downstream 156719 63309348 ~ 63310641 (+)
LOC110498285 NA coding downstream 160246 63312561 ~ 63320421 (+)
G1647433 NA non-coding upstream 17299 63121767 ~ 63124124 (+)
G1647431 NA non-coding upstream 24592 63115757 ~ 63116831 (+)
G1647437 NA non-coding upstream 25776 63115079 ~ 63115647 (+)
G1647411 NA non-coding upstream 64280 63075149 ~ 63077143 (+)
G1647397 NA non-coding upstream 92704 63048226 ~ 63048719 (+)
G1647477 NA non-coding downstream 50127 63202756 ~ 63204057 (+)
G1647419 NA non-coding downstream 80810 63233439 ~ 63235440 (+)
G1647485 NA non-coding downstream 86012 63238641 ~ 63238900 (+)
G1647487 NA non-coding downstream 90285 63242914 ~ 63243254 (+)
G1647429 NA non-coding downstream 136195 63288824 ~ 63289248 (+)
G1647342 NA other upstream 122735 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 647704 62486921 ~ 62493719 (+)
G1646509 NA other upstream 996133 62144183 ~ 62145290 (+)
G1646294 NA other upstream 1580339 61558041 ~ 61561084 (+)
LOC110498409 LOC106592792 other downstream 238996 63380908 ~ 63414582 (+)
G1648296 NA other downstream 975579 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1827735 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2309144 65461773 ~ 65463454 (+)

Expression


Co-expression Network