LOC110498282


Basic Information

Item Value
gene id LOC110498282
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63248622 ~ 63287372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955353.1
TATAAAAGTCCTGTCTCCTAGCATGTCCCAGCTACACACGTTTTTGGAGTCTTCCTGATAGCAACAaagaggttttttttttttttaaaaaaaagAAACACAAGACGGACACCGGGAGAGGATCATGTTGACGTTGACGCTAGCCCTTCTGGGCCTCAGTATAGGACTGGTGGCTAATGCTTTCCCCACACAGCAGTCTGGAAACGGGAAGAACTGGGTGGTGATTGTCGCTGGCTCCAATGGCTGGCACAACTACAGACACCAGGCCGGTGCTTGCCATGCGTACCAGATCGTCCACAAGAATGGCATCCCTGACAAGCAGATTGTTGTGATGATGTATGATGATCTGGCAACCAATAAGACAAACCCCACCCCAGGGGTGGTGATCAACCGACCCAACGGGACAGACGTCTACAAGGGAGTCCCCAAAGACTACACTGGAGACGCTGTGACCCCTGACAACTTCCTGGCGGTGCTGAAGGGTGACTCTGCCAGTACAAAGCAGGGTTCTGGAAAGGTACTGAAGAGTGGTCCCAACGATCACGTGTTTGTGTACATCACTGCTAACGGAGCGCCTGGTCTGCTGGCCTTCCCCAATGATGAGCTCTATGCTTCCGACCTCATGGACGTTATTATCTACATGCATAAGAACAGGAAATACAAAAAGTTGGTGTTCTATATTGATGCCTGTGATTCAGGATTAATGATGACCAAGCTGCCTGATGACATCAATGTGTATGCCACCACAGCAACCAACTCCTATGCCTGTTACTATGACGAGAAGAGGAAGACCTACCTGGGGGACTGGTACAGTGTTAATTGGATGGAAAACTCTGATGTGGAGGACCTGAGCAAGGAGACCCTAATGAGACAGTTCAAGATCGTCCAGAGCCACATCATGCAATTTGGAAACGAGACTCTGGCCAATATGAAGGTAAAGGCTTTTCAAGGTAATGCCAACGCCCGGCCTGCCCCCCCCATGACCCTGCAGCCTGTAGTGGAGCCAGGTCTGATCCCCAGCGCTGACGTCCCTATGGCCATCCTCACTAGGACATCCACAGCCGAGGCGTATCTCTACCAGCTCAAGGAGATTGAGCAGCTGACACAGAAGATGCGCAAGGTGGTGCAGTGTGTGACGGGCGATAACCACGAGAATCCGAAGATTCTGAGTGTGAAGATGGATCTGATGCAAAACCAGTGCTACAAGGATGCTGTCAGTCGCTACAAGAAACATTGCTTAACCTGGTTTTCCACTGAGCATGAGTATTATCTGCGGGACCTGTACATGTTGTTCAACCTGTGTGTGTCAAGATATGGAACAAATTGGTACTGTATCCATCTCATACCTCCCTCTTTTTATACTTCCCCACAAGGGTTTAGATCAATTCAATTTCTATTCAGAAAATTCCACATTTTCCGCATTGAAGATAATTGGAAGTGACCCCGACCTTGCGTTACACTATCCATGTCAATTCAAGCTTTTCAATGAAGACGAGTTTCACTAATGCACGATTTgaccaacaaaaacaaaacaaaaaatgggTTTGTTCAAGGTTTATTTCATTTCCAGTGAGCTGCTTCCATGGTctaataatgttattttttttgtctctctc
>XM_036955354.1
tattacgAATAAATCTGTTCCATTAAGGCAtgacaacatcctgctgaaacaagAAACACAAGACGGACACCGGGAGAGGATCATGTTGACGTTGACGCTAGCCCTTCTGGGCCTCAGTATAGGACTGGTGGCTAATGCTTTCCCCACACAGCAGTCTGGAAACGGGAAGAACTGGGTGGTGATTGTCGCTGGCTCCAATGGCTGGCACAACTACAGACACCAGGCCGGTGCTTGCCATGCGTACCAGATCGTCCACAAGAATGGCATCCCTGACAAGCAGATTGTTGTGATGATGTATGATGATCTGGCAACCAATAAGACAAACCCCACCCCAGGGGTGGTGATCAACCGACCCAACGGGACAGACGTCTACAAGGGAGTCCCCAAAGACTACACTGGAGACGCTGTGACCCCTGACAACTTCCTGGCGGTGCTGAAGGGTGACTCTGCCAGTACAAAGCAGGGTTCTGGAAAGGTACTGAAGAGTGGTCCCAACGATCACGTGTTTGTGTACATCACTGCTAACGGAGCGCCTGGTCTGCTGGCCTTCCCCAATGATGAGCTCTATGCTTCCGACCTCATGGACGTTATTATCTACATGCATAAGAACAGGAAATACAAAAAGTTGGTGTTCTATATTGATGCCTGTGATTCAGGATTAATGATGACCAAGCTGCCTGATGACATCAATGTGTATGCCACCACAGCAACCAACTCCTATGCCTGTTACTATGACGAGAAGAGGAAGACCTACCTGGGGGACTGGTACAGTGTTAATTGGATGGAAAACTCTGATGTGGAGGACCTGAGCAAGGAGACCCTAATGAGACAGTTCAAGATCGTCCAGAGCCACATCATGCAATTTGGAAACGAGACTCTGGCCAATATGAAGGTAAAGGCTTTTCAAGGTAATGCCAACGCCCGGCCTGCCCCCCCCATGACCCTGCAGCCTGTAGTGGAGCCAGGTCTGATCCCCAGCGCTGACGTCCCTATGGCCATCCTCACTAGGACATCCACAGCCGAGGCGTATCTCTACCAGCTCAAGGAGATTGAGCAGCTGACACAGAAGATGCGCAAGGTGGTGCAGTGTGTGACGGGCGATAACCACGAGAATCCGAAGATTCTGAGTGTGAAGATGGATCTGATGCAAAACCAGTGCTACAAGGATGCTGTCAGTCGCTACAAGAAACATTGCTTAACCTGGTTTTCCACTGAGCATGAGTATTATCTGCGGGACCTGTACATGTTGTTCAACCTGTGTGTGTCAAGATATGGAACAAATTGGTACTGTATCCATCTCATACCTCCCTCTTTTTATACTTCCCCACAAGGGTTTAGATCAATTCAATTTCTATTCAGAAAATTCCACATTTTCCGCATTGAAGATAATTGGAAGTGACCCCGACCTTGCGTTACACTATCCATGTCAATTCAAGCTTTTCAATGAAGACGAGTTTCACTAATGCACGATTTgaccaacaaaaacaaaacaaaaaatgggTTTGTTCAAGGTTTATTTCATTTCCAGTGAGCTGCTTCCATGGTctaataatgttattttttttgtctctctc
>XM_036955355.1
ACAAGACGGACACCGGGAGAGGATCATGTTGACGTTGACGCTAGCCCTTCTGGGCCTCAGTATAGGACTGGTGGCTAATGCTTTCCCCACACAGCAGTCTGGAAACGGGAAGAACTGGGTGGTGATTGTCGCTGGCTCCAATGGCTGGCACAACTACAGACACCAGGCCGGTGCTTGCCATGCGTACCAGATCGTCCACAAGAATGGCATCCCTGACAAGCAGATTGTTGTGATGATGTATGATGATCTGGCAACCAATAAGACAAACCCCACCCCAGGGGTGGTGATCAACCGACCCAACGGGACAGACGTCTACAAGGGAGTCCCCAAAGACTACACTGGAGACGCTGTGACCCCTGACAACTTCCTGGCGGTGCTGAAGGGTGACTCTGCCAGTACAAAGCAGGGTTCTGGAAAGGTACTGAAGAGTGGTCCCAACGATCACGTGTTTGTGTACATCACTGCTAACGGAGCGCCTGGTCTGCTGGCCTTCCCCAATGATGAGCTCTATGCTTCCGACCTCATGGACGTTATTATCTACATGCATAAGAACAGGAAATACAAAAAGTTGGTGTTCTATATTGATGCCTGTGATTCAGGATTAATGATGACCAAGCTGCCTGATGACATCAATGTGTATGCCACCACAGCAACCAACTCCTATGCCTGTTACTATGACGAGAAGAGGAAGACCTACCTGGGGGACTGGTACAGTGTTAATTGGATGGAAAACTCTGATGTGGAGGACCTGAGCAAGGAGACCCTAATGAGACAGTTCAAGATCGTCCAGAGCCACATCATGCAATTTGGAAACGAGACTCTGGCCAATATGAAGGTAAAGGCTTTTCAAGGTAATGCCAACGCCCGGCCTGCCCCCCCCATGACCCTGCAGCCTGTAGTGGAGCCAGGTCTGATCCCCAGCGCTGACGTCCCTATGGCCATCCTCACTAGGACATCCACAGCCGAGGCGTATCTCTACCAGCTCAAGGAGATTGAGCAGCTGACACAGAAGATGCGCAAGGTGGTGCAGTGTGTGACGGGCGATAACCACGAGAATCCGAAGATTCTGAGTGTGAAGATGGATCTGATGCAAAACCAGTGCTACAAGGATGCTGTCAGTCGCTACAAGAAACATTGCTTAACCTGGTTTTCCACTGAGCATGAGTATTATCTGCGGGACCTGTACATGTTGTTCAACCTGTGTGTGTCAAGATATGGAACAAATTGtatcCTGATGACAATAGAGAAAGTGTGTCTAGTTGAAGAGACAGGTTGCGGTGTCTGCAAAAAGGAGGGGTCCGAGTAGACAAGTCTTGTCTTTTCACTGACAAGGAATAAAGTTtgaatctttttttttattttttaatcacTACTCTCTTCTAATCATAGCTTtgatttcttgtttttttccccctccggTTTTAATGAGACCTTTTTTTAAAGATGTGTTTTTATGATGAATTTCACTATATCCCTGTGAGAGTTTGTTTTGGATGAGAATCATGTTTttctatttttaattttttttactgcTCTGATTTCTATGAACACTAACTAATGAGAGGAGATCAGGAGCCAGTTTGCCCACTTGGttgtcagctctgctctgctggtAGCTCTGCTGGTTGCTCTGCTGGTAGCTCTGCTCTGCAGGTAGC

Function

NR:

description
legumain-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955353.1 False 1616 mRNA 0.47 13 63248622 63286935
XM_036955354.1 False 1574 mRNA 0.48 13 63249484 63286935
XM_036955355.1 True 1658 mRNA 0.48 13 63259226 63287372

Neighbor

gene id symbol gene type direction distance location
pcnx1 pcnx1 coding upstream 16464 63153353 ~ 63232158 (+)
med6 med6 coding upstream 95993 63141423 ~ 63152629 (+)
map3k9 map3k9 coding upstream 145578 63050817 ~ 63103044 (+)
LOC100136022 NA coding upstream 207716 62885583 ~ 63042917 (+)
LOC110512290 LOC106600942 coding upstream 476666 62655733 ~ 62771956 (+)
LOC110498284 chp1 coding downstream 5197 63292569 ~ 63309243 (+)
LOC118941523 NA coding downstream 21976 63309348 ~ 63310641 (+)
LOC110498285 NA coding downstream 25503 63312561 ~ 63320421 (+)
LOC110498286 NA coding downstream 52413 63339785 ~ 63346292 (+)
rtf1 rtf1 coding downstream 61577 63348949 ~ 63372335 (+)
G1647487 NA non-coding upstream 5368 63242914 ~ 63243254 (+)
G1647485 NA non-coding upstream 9722 63238641 ~ 63238900 (+)
G1647419 NA non-coding upstream 13182 63233439 ~ 63235440 (+)
G1647477 NA non-coding upstream 44565 63202756 ~ 63204057 (+)
G1647433 NA non-coding upstream 124498 63121767 ~ 63124124 (+)
G1647429 NA non-coding downstream 1452 63288824 ~ 63289248 (+)
G1647442 NA non-coding downstream 7787 63295159 ~ 63296728 (+)
G1647502 NA non-coding downstream 14539 63301911 ~ 63302540 (+)
G1647422 NA non-coding downstream 23585 63310957 ~ 63380175 (+)
G1647411 NA other upstream 171479 63075149 ~ 63077143 (+)
G1647342 NA other upstream 229934 63016955 ~ 63018688 (+)
srsf5a LOC106611464 other upstream 754903 62486921 ~ 62493719 (+)
G1646509 NA other upstream 1103332 62144183 ~ 62145290 (+)
LOC110498409 LOC106592792 other downstream 104253 63380908 ~ 63414582 (+)
G1648296 NA other downstream 840836 64128208 ~ 64129068 (+)
G1648608 NA other downstream 1692992 64980364 ~ 64980943 (+)
G1649268 NA other downstream 2174401 65461773 ~ 65463454 (+)
G1649291 NA other downstream 2257005 65544377 ~ 65545055 (+)

Expression


Co-expression Network