RNA id: XM_036955355.1


Basic Information

Item Value
RNA id XM_036955355.1
length 1658
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110498282
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63248622 ~ 63287372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGACGGACACCGGGAGAGGATCATGTTGACGTTGACGCTAGCCCTTCTGGGCCTCAGTATAGGACTGGTGGCTAATGCTTTCCCCACACAGCAGTCTGGAAACGGGAAGAACTGGGTGGTGATTGTCGCTGGCTCCAATGGCTGGCACAACTACAGACACCAGGCCGGTGCTTGCCATGCGTACCAGATCGTCCACAAGAATGGCATCCCTGACAAGCAGATTGTTGTGATGATGTATGATGATCTGGCAACCAATAAGACAAACCCCACCCCAGGGGTGGTGATCAACCGACCCAACGGGACAGACGTCTACAAGGGAGTCCCCAAAGACTACACTGGAGACGCTGTGACCCCTGACAACTTCCTGGCGGTGCTGAAGGGTGACTCTGCCAGTACAAAGCAGGGTTCTGGAAAGGTACTGAAGAGTGGTCCCAACGATCACGTGTTTGTGTACATCACTGCTAACGGAGCGCCTGGTCTGCTGGCCTTCCCCAATGATGAGCTCTATGCTTCCGACCTCATGGACGTTATTATCTACATGCATAAGAACAGGAAATACAAAAAGTTGGTGTTCTATATTGATGCCTGTGATTCAGGATTAATGATGACCAAGCTGCCTGATGACATCAATGTGTATGCCACCACAGCAACCAACTCCTATGCCTGTTACTATGACGAGAAGAGGAAGACCTACCTGGGGGACTGGTACAGTGTTAATTGGATGGAAAACTCTGATGTGGAGGACCTGAGCAAGGAGACCCTAATGAGACAGTTCAAGATCGTCCAGAGCCACATCATGCAATTTGGAAACGAGACTCTGGCCAATATGAAGGTAAAGGCTTTTCAAGGTAATGCCAACGCCCGGCCTGCCCCCCCCATGACCCTGCAGCCTGTAGTGGAGCCAGGTCTGATCCCCAGCGCTGACGTCCCTATGGCCATCCTCACTAGGACATCCACAGCCGAGGCGTATCTCTACCAGCTCAAGGAGATTGAGCAGCTGACACAGAAGATGCGCAAGGTGGTGCAGTGTGTGACGGGCGATAACCACGAGAATCCGAAGATTCTGAGTGTGAAGATGGATCTGATGCAAAACCAGTGCTACAAGGATGCTGTCAGTCGCTACAAGAAACATTGCTTAACCTGGTTTTCCACTGAGCATGAGTATTATCTGCGGGACCTGTACATGTTGTTCAACCTGTGTGTGTCAAGATATGGAACAAATTGtatcCTGATGACAATAGAGAAAGTGTGTCTAGTTGAAGAGACAGGTTGCGGTGTCTGCAAAAAGGAGGGGTCCGAGTAGACAAGTCTTGTCTTTTCACTGACAAGGAATAAAGTTtgaatctttttttttattttttaatcacTACTCTCTTCTAATCATAGCTTtgatttcttgtttttttccccctccggTTTTAATGAGACCTTTTTTTAAAGATGTGTTTTTATGATGAATTTCACTATATCCCTGTGAGAGTTTGTTTTGGATGAGAATCATGTTTttctatttttaattttttttactgcTCTGATTTCTATGAACACTAACTAATGAGAGGAGATCAGGAGCCAGTTTGCCCACTTGGttgtcagctctgctctgctggtAGCTCTGCTGGTTGCTCTGCTGGTAGCTCTGCTCTGCAGGTAGC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885087 lncRNA upstream 15972 63242914 ~ 63243254 (+) True G1647487
TU1885085 lncRNA upstream 20326 63238641 ~ 63238900 (+) True G1647485
TU1884987 lncRNA upstream 23786 63233439 ~ 63235440 (+) True G1647419
TU1885076 lncRNA upstream 55169 63202756 ~ 63204057 (+) True G1647477
TU1885029 lncRNA upstream 135102 63121767 ~ 63124124 (+) True G1647433
TU1885025 lncRNA downstream 1452 63288824 ~ 63289248 (+) True G1647429
TU1885038 lncRNA downstream 7787 63295159 ~ 63296728 (+) True G1647442
TU1885102 lncRNA downstream 14539 63301911 ~ 63302540 (+) True G1647502
TU1884994 lncRNA downstream 23585 63310957 ~ 63380175 (+) True G1647422
TU1885023 lncRNA downstream 25189 63312561 ~ 63320421 (+) True LOC110498285
XM_036955352.1 mRNA upstream 27068 63153353 ~ 63232158 (+) False pcnx1
XR_005037831.1 mRNA upstream 27068 63153353 ~ 63232158 (+) False pcnx1
XM_036955351.1 mRNA upstream 27068 63153354 ~ 63232158 (+) True pcnx1
XM_021574931.2 mRNA upstream 106597 63141423 ~ 63152629 (+) True med6
XM_036955349.1 mRNA upstream 156182 63050817 ~ 63103044 (+) True map3k9
XM_036955356.1 mRNA downstream 5197 63292569 ~ 63309243 (+) True LOC110498284
XR_005037832.1 mRNA downstream 21976 63309348 ~ 63310641 (+) True LOC118941523
XR_002469814.2 mRNA downstream 25503 63312875 ~ 63316816 (+) False LOC110498285
XM_036955358.1 mRNA downstream 52413 63339785 ~ 63346290 (+) False LOC110498286
XM_021574912.2 mRNA downstream 52413 63339785 ~ 63346292 (+) False LOC110498286
TU1885075 other upstream 55169 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 182083 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 240538 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 765507 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 1113936 62144183 ~ 62145290 (+) True G1646509
TU1885128 other downstream 104253 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 840836 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1692992 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 2174401 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 2257005 65544377 ~ 65545055 (+) True G1649291

Expression Profile