RNA id: TU1884993


Basic Information

Item Value
RNA id TU1884993
length 2198
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G1647421
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63322294 ~ 63329656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactgttcccctgaacaaggcagttaacccattgttcccctgaacaaggcagttaacccattgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagttaacccactgttcccctgaacaaggcagtttaacccactgttcctaggccgtcattgaaaataagaatttgtttctcaactgacttgcctagtttaaaaaaaaaaaataaggaaacATTGTTTTCTAAAAACAGAACATGTTTGGGAGATTTGATTCAATTGTTAAATTCTATTCAGAGTGAATTTCACCACAGGTATACAGTTATCTATTACTATCTAAACTGTATTTTATGGAATGAACACCTTCAGAATCAGACATATTGACATCCAGTGTGttaacacaggcagcccaattctgatctttttttccactaattggtctttttgaccaatcagatcggctcttttgccactaattggtctttttgGCCAATCAGATCGGCTCTtttgccactaattggtctttttgGCCAATCAGATCggctcttttgccaataattaGACAACATATTAGAGTTGTGCTTCCTGTGGAAACAGCCTATCGTAATTGATCAATAAAATAACGATCTAGAAAATGAGAATATATTTAGTTTAAAAGCAAGACATCTAGACATTTCAgaagaaaataaaacaattctGCATGATTTTCCAGTTTGTTTGATCTATTGTAATCTCTGTTTTTTTAAAGGAATGTTTAGCATATTAGAAGCTATATAATGTAATGTTTGTTTAGAGGGAAGACTATGGTGTATACTGTGGTTTAGGAGGACGTTTGTTCCTCGTAAGAAACACCCAACAGGGCGCGAAGTACCACATGTTGAAACCGAACGACTCACATTTGAATTGGCAAAACGGTCTTCTGGGGAAATTCAATATTCAAGCTACGTTCCCTATGgtactagtgcactactttttgaccgggggggaccatagggctctagtacaaagtagtgcactatgtagggaatagggtgtcattttgggaAGTAGCCTCGGACTCGTACAGTATCATTCTGTAAGAACTAAGGACCCACTGATTTAGGAGGCCTGTGTTGATGCCTCTTTTCACAGTTTCCATTCTGTTCAAATGTTGCACCGTTGTCCATATCAATCGAACTATGTATGCATGTATACATGTGAATTATTATGCATCCTTCCTATTAATAGAGCTGCCTCAAGGAGAAACgactgaacaaaaaaaaaaaaaATGTATGAACTAATTCACTACCATCATCCTGTCTTGAAtactgtgtttaaaaaaaatatatataaaaaaaaaattgtaacgcTACATAATGTGGCAATGCTTAGGAAAAGATCAATCTAGAATGTATCGATCATTTAAAACTATATTAAATGCGAGGAGAAAATATTATGCATGACTTAAAAGTAATCAATGATTTGTATCGCGGGCAATAATCAACTTGGTCCATTTGCGTTGATCATTAGATCTGTGATACTGAAAGGTTGACATTGTGGCGCTGTGATATACGGTAGTAATACGTTTTACAGGTCTTGAATAACAGGGGACGGTTGTTGACATCACCCTGAGCACATTGTTTTGATAAAAAGAATGTACGATGTTGATCAACAGCCTGAAATCCAGGCTGTTTGCGCTATCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTAGCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTACTATCATTCTACTAGCATTCTACTATCATTCTACTATCATTCTAATGACAAGGAGTGGCATGATGGGCCTAAAGACTGGATTTCAGGCTGTTGATCCAAGTACTACTAGTAAACAAACAGAATGAGTTGACTGTGCGTTGTGGTGTGACTATGCAGTCCAGCGAGAGGCCCTGGGGCATTGCTGGAGCAACGGAGTCTCCCGTCTCGGTTGTGGAATTAACTGAAGAAATGTGCATCAGAAATGTAGCAATAAAAAACAGCATGGTGCCAATAGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885023 lncRNA upstream 1873 63312561 ~ 63320421 (+) True LOC110498285
TU1885102 lncRNA upstream 19754 63301911 ~ 63302540 (+) True G1647502
TU1885038 lncRNA upstream 25566 63295159 ~ 63296728 (+) True G1647442
TU1885025 lncRNA upstream 33046 63288824 ~ 63289248 (+) True G1647429
TU1885087 lncRNA upstream 79040 63242914 ~ 63243254 (+) True G1647487
TU1885106 lncRNA downstream 488 63330144 ~ 63334539 (+) True G1647504
TU1885110 lncRNA downstream 8409 63338065 ~ 63338328 (+) True G1647507
TU1885113 lncRNA downstream 24458 63354114 ~ 63355784 (+) False G1647510
TU1885114 lncRNA downstream 24458 63354114 ~ 63355784 (+) True G1647510
TU1885115 lncRNA downstream 24681 63354337 ~ 63354801 (+) True G1647511
XR_002469814.2 mRNA upstream 5478 63312875 ~ 63316816 (+) False LOC110498285
XR_005037832.1 mRNA upstream 11653 63309348 ~ 63310641 (+) True LOC118941523
XM_036955356.1 mRNA upstream 13051 63292569 ~ 63309243 (+) True LOC110498284
XM_036955355.1 mRNA upstream 34922 63259226 ~ 63287372 (+) True LOC110498282
XM_036955354.1 mRNA upstream 35359 63249484 ~ 63286935 (+) False LOC110498282
XM_036955358.1 mRNA downstream 10129 63339785 ~ 63346290 (+) False LOC110498286
XM_021574912.2 mRNA downstream 10129 63339785 ~ 63346292 (+) False LOC110498286
XM_021574913.2 mRNA downstream 10129 63339785 ~ 63346292 (+) True LOC110498286
XM_036955357.1 mRNA downstream 19293 63348949 ~ 63372335 (+) True rtf1
LOC110498409 mRNA downstream 51252 63380908 ~ 63414582 (+) False LOC110498409
TU1885075 other upstream 118237 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 245151 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 303606 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 828575 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 1177004 62144183 ~ 62145290 (+) True G1646509
TU1885128 other downstream 61969 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 798552 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1650708 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 2132117 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 2214721 65544377 ~ 65545055 (+) True G1649291

Expression Profile