RNA id: LOC110498409


Basic Information

Item Value
RNA id LOC110498409
length 3227
RNA type mRNA
GC content 0.54
exon number 15
gene id LOC110498409
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63380908 ~ 63414582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATTGTGGAACATGCAGACATTCTAGAACTCAACGCCATCGTTGGAACCCCGAGGAAAGAGAATGTTATGACGGAACAGGAAAAAGAGTGGAGTCAGACATCCTTGACAGACGGGAGTTCTCTCCCAGCCGCCTCAGAGCAGATAGCAGAGCTGAGGGCTGagctggagaagagagagcaggccCTGAAAGACGACCAGGAGGAACGAGACACACTCGTCATCACGCAGGAAGAACTGGACCGACAGAACAGGGAAGCTACACAGCATGTGATCTCAGTGAAGGAGAAGCTCTCTGTTCAGCTGAAGGAGTCTGAGACTGAGGTGTTCAGGTTGCAGTCAGAGCTCAGTACCACCACTGACCAGAGGGTGGCGCTACAGGAAGAACTACAGGCCCAACAGGAGAAACTGAGCTAGAGTGCTTACACCCTGAACCACCTCCACATGGGCAAGCAGCAGCTGGAGGCCACCGTCAAGGAGTTGAGGGAGAAACTTGGACGGGCAACAGCGATGGGCAAAGAGAACCAGGTGCTCCAGAGAACCgtacaggagagggaggagcagcTGTCTGCTGCCCGGGCAGAGCTGTGCgaggctggggagagagggagagaatccgGGGGGTCcggagaggagctggaggagctcAGGAGAGAGCTGACTGAGATGAGGAGCTCCCAGGAGAAGGTGATTTTCAGAAGACTacgagatggagatggagaagcAGAGGCTGAAGACAGAGGCTGACCAGGCCCAGGGGAGGTTAGAGGAGCTGGCCAGGCAGGTCAGGGAGGTCCAGGATGCTCTCGGCAGGACCGTCCTGGAGAAGGACACCCACATCGAGGCTTTGAAGCTGGAGAAGAGCCAGCTGGAAGGGGAGCTGATCCAGGCAGAGAGGGGCCTCCAGGAGCAGGTCAGGCAGTACCAGCAGACCATCGAGGAGCTGACCGCTGCCCGCTCCATGGACGCCTCGGCACTGCAGACGGCGCATGAGAGGAGGGTGAAGTTGAACCTGGAGAAGAACCTGGAGAAGAACCTGAGGGAGCTGGAGGCCGTGGTCCAGGCAGCCACCCAGGAGGCTGAGACCCTGAGAGCCAACATGGCCGCCGCCCAGAGGGAGCTGGAGGCCGGGGTCCAGGCAGCCACCCAGGAGGCTGAGACCCTGAGAGCCAACATGGCCGCCGCCCAGAGGGAGCTGGAGGCCGGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGCCAACATGGCCGCCACCCAGAGGGAGCTGGAGGCCGGGAGGGAGCTGGAGGCCAGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGCCAACATGGCCGCCACCCAGAGGGAGCTGGAGGCCAGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGCCAACATGGCCGCCACCCAGAGGGAGCTGGAGGCCAGGAGGGAGCTGGAGGCCAGGGTCCAGGCAGCCACCCAGGGGGCTGAGACCCTGAGAGGAGCTCTGGAGGAGAAGGACAAGCAGCTGGGAGGCGTGAAGGAAGACAACAGCCACCTGAAGGAGGAGATAGAGCGTCTGAGGGACCAGCAGAGTAGACCCCAGCCCCCCGGCCTGGCTGAGCCACGCACCCCGGACATCATCAACGAACTGGAGACGGACATCACCCAGCTGAAGACCTCAGGAGATGCCTGGAGGGGGACCATAGAGGAGCATAGAGGAGCATAGAGGACCATAGAGGACCATAGAGGAGCAGCGGGggcacctcctctcctcccagcagTCTCTCCTGGCGCAGCAGAATGAGTTGGAGCAGGCCCACCAACGCCacgagcagagcagagagaactaCGATAGGCTGATCCACGCGAAGGACGAGGAGATTGGGCGCCTGCAGCAGGAAGTAGTAGATCACCTCGGCCCTACCCGATACTCCCAGGAACAGGAAGTGGTCATTCTCCAACGGGAAGACGAGACCAAGTCGTCCCTGAATAACAGGGAGAACGGCAACGAGAAACACGACCTGTccaagatggaggtagagagactaGTGAAGGGCATTAAGGAGAAGGAGACGGAAATCAGCCAGCTGAATGGGAAGAACCAGAACCTCACCAGACAGCTGGACCAGCTGGTGGTCTccagagaggagatggggaagcTCAGCCAGATGGTCTAGCAGAAAGACGTAGAGATCCAGGCGCTGCACTCCCACGTCTCCCTGGGGGGGACGAGGCCACAGCCAAGACGTGATGTTCCTCCTCCAGCAGCTGCGGGCCAATGCCGTGGAGAGAGAGCAGGTCCTGGCGGTGCTGAATGAGAAGATGAGGGAGAACAGCCGGCTTAGGGGGGACTACCAACGCATCACGGACATTGTAGCAGGGAAGGAGGCTGTGCTCCTCAAGGTCCAGCAGGAGAACTTGAGGCTGTCCACCATGTCTGACCCCTCAGCGAGTCGAGAGATGTTCAGAGAGACCATTCAGAATTTGTCACGGATCATCAGGTATTGTTTtGTGGATGCTGACAACGACTGCACCTCCGATCTCTCTCTGCGTGGACTACAGCCGTCTGATCCACAGCTATGAGCAGAAGGAGAGGAAGCTCGGGCAGTCTCAGTCACGAACTAGCCCACGTCCAACAGACCATCAGCCGGCTGAGCAGTACTAAAGATGTCCTCCTGGGGAAACTGGACAGTGTGGCGCAGAGTCCCCAAGTCACCCCACTGTCTGCTGCCCAGCCTCCTGCTGCAGTGGAACCTCCCAGACACCAGGTGGCAGCACCTGCAACACCAGGGAACCAGGAAGGACTGAGACAGGAGCTGGAGTCTCTGAGAGCCCTCCTGTCTGAGAGGGAGACTATGATCAGGACCTTGCAGGAGTACAACAACCACCATCTGTCTAACTCGGCCCAGGTGTCAGAGAGCGAGCAGCGTGGCCAGGCCGACGAGGCCAGAcagctcagagagagactggactCCCTGCAGCGCTCTGTCAGGGAGAAAGACCTGCTCATTAAGACTGAAGGAGACCAGCTCAACCAgGTGAGTGAGAACCTGAGGAACCGTGAGAGCGACAACGAGGTGTAAAAACAGGCCGTGACCAACCTGAAGGAGCGAGCTCTTATCCTGGAGATGGATACCAGGAAGCTGAAGgaTGAGAACGAGGCCCAGCGGTGCCGGGAGAAGGAGTCAGAGTTCAGAGCTCTGCAGGagaccgTAAACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1884994 lncRNA upstream 733 63310957 ~ 63380175 (+) True G1647422
TU1885113 lncRNA upstream 25124 63354114 ~ 63355784 (+) False G1647510
TU1885114 lncRNA upstream 25124 63354114 ~ 63355784 (+) True G1647510
TU1885115 lncRNA upstream 26107 63354337 ~ 63354801 (+) True G1647511
TU1885110 lncRNA upstream 42580 63338065 ~ 63338328 (+) True G1647507
TU1885138 lncRNA downstream 2549 63417131 ~ 63418627 (+) True G1647529
TU1885141 lncRNA downstream 10862 63425444 ~ 63425999 (+) True G1647532
TU1885145 lncRNA downstream 16343 63430925 ~ 63431170 (+) True G1647536
TU1885146 lncRNA downstream 17176 63431758 ~ 63432043 (+) True G1647537
TU1885148 lncRNA downstream 19786 63434368 ~ 63434704 (+) True G1647539
XM_036955357.1 mRNA upstream 8573 63348949 ~ 63372335 (+) True rtf1
XM_021574912.2 mRNA upstream 34616 63339785 ~ 63346292 (+) False LOC110498286
XM_021574913.2 mRNA upstream 34616 63339785 ~ 63346292 (+) True LOC110498286
XM_036955358.1 mRNA upstream 34618 63339785 ~ 63346290 (+) False LOC110498286
XR_002469814.2 mRNA upstream 64092 63312875 ~ 63316816 (+) False LOC110498285
XM_036955360.1 mRNA downstream 20742 63435324 ~ 63500172 (+) False fbln5
XM_036955359.1 mRNA downstream 23480 63438062 ~ 63500172 (+) True fbln5
XM_036955361.1 mRNA downstream 92204 63506786 ~ 63534703 (+) False LOC110498294
XM_036955362.1 mRNA downstream 92204 63506786 ~ 63534703 (+) True LOC110498294
XM_036955363.1 mRNA downstream 143221 63557803 ~ 63565484 (+) True plek2
TU1885075 other upstream 176851 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 303765 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 362220 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 887189 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 1235618 62144183 ~ 62145290 (+) True G1646509
TU1886125 other downstream 713626 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1565782 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 2047191 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 2129795 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 2163857 65578439 ~ 65582582 (+) True G1649309

Expression Profile