RNA id: TU1883202


Basic Information

Item Value
RNA id TU1883202
length 263
RNA type TUCP
GC content 0.49
exon number 2
gene id LOC110498404
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61242422 ~ 61308910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATGTTTTTCTACAGCAGATACCCTTCATCCAACATGCTCAAGACGTTCTTCTCAGACGTCAAGtttAACCGCTGCATCACGTCTCAGCTCATCAAGTGGTTCAGTAACTTCAGAGAGTTCTATTACATCCAGATGGAGAAGTTTGCTCGGCAGGCCATCAACGAAGGAGTGACCACCAACGAGGACCTGTCTGTGGGCAGGGAGTCTGAGCTCTACCGAGCCCTCAACATGCACTACAACAAGGCCAACGACTTTGAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883251 lncRNA upstream 23035 61256452 ~ 61256784 (+) True G1646112
TU1883196 lncRNA upstream 25684 61246818 ~ 61254135 (+) False LOC110498404
TU1883238 lncRNA upstream 53394 61225758 ~ 61226425 (+) True G1646100
TU1883227 lncRNA upstream 74803 61201859 ~ 61205016 (+) True G1646090
TU1883225 lncRNA upstream 77701 61200860 ~ 61202118 (+) False G1646089
TU1883266 lncRNA downstream 6083 61297924 ~ 61298353 (+) False G1646126
TU1883269 lncRNA downstream 6083 61297924 ~ 61298353 (+) True G1646126
TU1883190 lncRNA downstream 12507 61304348 ~ 61306826 (+) False LOC110498404
TU1883191 lncRNA downstream 13510 61305351 ~ 61307890 (+) False LOC110498404
TU1883193 lncRNA downstream 13510 61305351 ~ 61307195 (+) False LOC110498404
XM_036955272.1 mRNA upstream 342622 60888364 ~ 60937197 (+) False xdh
XM_036955273.1 mRNA upstream 342622 60888365 ~ 60937197 (+) True xdh
XM_036955270.1 mRNA upstream 412854 60849843 ~ 60866965 (+) True LOC110498232
NM_001124718.1 mRNA upstream 497309 60779941 ~ 60782510 (+) True LOC100136771
XM_036955236.1 mRNA upstream 710080 60556739 ~ 60569739 (+) True LOC110498226
XM_036955276.1 mRNA downstream 70591 61362432 ~ 61382346 (+) True LOC118941508
XM_036955277.1 mRNA downstream 100731 61392572 ~ 61401264 (+) False LOC118941509
XM_036955278.1 mRNA downstream 100731 61392572 ~ 61401264 (+) False LOC118941509
XM_036955284.1 mRNA downstream 115800 61407641 ~ 61414759 (+) False LOC118941510
XM_036955283.1 mRNA downstream 115800 61407641 ~ 61429457 (+) False LOC118941510
TU1883226 other upstream 76467 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 540862 60728557 ~ 60738957 (+) True G1645444
TU1882393 other upstream 541438 60726895 ~ 60738381 (+) False G1645444
TU1882402 other upstream 545920 60726895 ~ 60733899 (+) False G1645444
TU1882410 other upstream 546571 60726895 ~ 60733248 (+) False G1645444
TU1883395 other downstream 52946 61344787 ~ 61345154 (+) True G1646225
TU1883513 other downstream 266200 61558041 ~ 61561084 (+) True G1646294
TU1883836 other downstream 852342 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 1195160 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 1725114 63016955 ~ 63018688 (+) True G1647342

Expression Profile