RNA id: XM_036955273.1


Basic Information

Item Value
RNA id XM_036955273.1
length 5379
RNA type mRNA
GC content 0.50
exon number 32
gene id xdh
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60888364 ~ 60937197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatacagggtgaCTGAATGAATATATTCATTGTCACAAGGTAATGTATCAGTCTTCACTGACAACAGTAGAGTGCCCACAAACCACTAGCCTAAACATGTCGGACCTGACCTACGGAGAGCAGACTAACAGGAATAATCTGACGGATCACCACATGAGCGGAGATGAACTTGTTTTCTTTGTCAATGGAAAAAAGTTGTTCCTTGACTGTGTGTACCAGTGGGTTTGACAGGTACTAAGCTGGGCTGTGCAGAGGGAGGATGTGGAGCCTGTACTGTGATGCTCTCCAAATATCAACCCCACCTCAGCAAAGTGCTTCACCACTCGGTGAATGGGTGTCTGGCCCCTCTGTGTTCTCTCCATCACTGTGCTGTCACCACGGTGGAAGGCATCGGCAGCGTGGCAGGGAAACTCCACCCCGTTCAGgagcGTATCGCTAAGTCTCATGGTTCTCAGTGTGGGTTCTGTACCCCAGGTATCGTCATGTCTTTGTATGCTCTGCTCAGGAACAACCCTACACCCCGCATGGCTGACATAGAGGAGGCGTTCCAAGGGAACCTGTGTCGCTGTACTGGTTACAGACCAATTCTGGAGGGGTACAAGACGTTCACCAAAGAGAGGAGCTGTTGTGGTGGCAAAGGGATGGAAAACGGCTGCTGCATGACCAACAGAGTAGAGACCAAAGGATACACTGACGAGAGTGTCAACAGTACCTCAGTGCTGCCTGCTCCTCTCTACAACCCAGCTGACTTCCTCCCTCTGGACCCCACTCAGGAGATCATCTTCCCACCAGAGCTGATGtCCCTGTGTAAAGGCCAGTCCTCTCAACAGCTGAGGTTCAGAGGAGAGAGGGTTCTGTGGCTTCAGCCAGCTTCTCTGGATCAACTTCTAGAGCTTAAGACTCAGTACCCCAACGCGAAGATGGTGGTTGGTAACACGGAAGTCGGTATTGAGATGAAGTTTAAGAACCTGTTGTATCCTGTTATTCTGGCCCCGGGATACATCCCCGAGCTCAACACCATACAGCACACTGACGAGGGTATAGTATTTGGAGCGTCCTGTTCCCTGACCCTGCTGGGTGATGTGCTGAAGGCTGCGGTGGGTAAACTGCCCCTCTACCAGACTGAAGTCTTCAACGCTGTACTGGAGCAACTTCGCTGGTTCGCTGGACTACAGATACGCAACGTGGCAGCCATTGGAGGTAACATCATGACTGCCAGCCCCATCTCCGACCTCAACCCTGTCTTTATGGCTGCTGGCTGCAAGCTCACGCTCATGTCCAAAGgtggtGAGCGTGTGGTTGTGATGGATGAGAAGTTCTTCCCAGGTTACAGAAAGACCATCCTGACACCTGAGGAGGTTCTTCTATGTGTCCTGATCCCGTACACCAAgaagggtCAGCACTTTGCTGCCTATAAGCAGTCTCCTCGTCGTGAGGATGACATCAGCATTGTGACGTCAGGGATGAGTGTGACATTCGCCGAGGGGTCAACCGTCGTCAAGCACCTGGCCCTTAGTTACGGAGGGATGGCTGCTACTACTGTCATGGCTAAGAACACAGCCAGCAGACTTCTGGGAAAACAGTGGGGGGAAGAGCTTCTGCAGGATGCTTGTTCCTCATTGGCTGAGGAGATGACCCTTCACCCCTCTGCGCCGGGTGGCATGGTGACCTACCGACGAACTCTGACCCTCAGCCTGTTTTACAAGTTTTACCTGACTGTACAACAGAAACTGGCCAGTGAGggtgcATATATAGAGGGTGTCAGAGATGACTACATCAGTGCTACAGAGATCTACCACCAGACGTCTCCCTCCAGTGTCCAGATTTTCCAGGCGGTTCCAGACGGTCAGAAGGAGGAGGACGTGGTGGGCCGTCCCATGATGCACCTCTCAGCCTTGAAGCAGGCGACGGGCGAGGCGGTTTACTGTGACGACATCCCTCTCTACGAGAACGAACTGTACCTCTGTCTTATAACCAGCACCAAGGCCCACGCAACCATAcaGTCTATAGATACAGCGGAGGCAGAGAGTATGCCAGGTGTGGTGACGTGTGTGTTCGCCAAGGACATCCCTGGCAGCAACATGACAGGACCTATCGTCTACGACGAGACTGTCCTCGCTGATGACacgGTGACGTGTGTGGGCCACATCATAGGAGCTGTAGTAGCAGACACTCAGGCTCACGCTCAGAGAGCAGCCAAGGCCGTGAGGATCACCTACCAGGAACTACAGCCTGTAATCATCACCATACAGGACGCCATTACCCACCAGTCCTTCTTCCAGCCGGTTAGAACCATCCAGAGGGGAGACCTGGACCAAGGGTTCACACAGGCTGACCACATCCtggaggGTGAGATGCATATGGGAGGCCAGGAACACTTCTACCTGGAGACCAACGTTACTGTAGCTGTACctaaaggagaggatggagagatggagctgTTTGTCTCTACTCAGTCTGCTACCAAgacccagtctCTGGTTGCTAAGGCGTTGGGTGTCCCGGCCAGTAGAGTGGTGATCAGAGtgaagaggatgggaggaggattCGGAGGGAAGGAGAGCAGGTCAACCACCCTGTCTACCGTGGTTGCTGTGGCTGCTCAGAAgtTGAAGAGGCCAGTGAGATGTATGTTGGATAGAGACGAAGACATGCTGGTGACGGGAGGACGACACCCCTTCTATGGACGTTACAAGGTGGGCTTTATGAAGTCAGGTAAAGTGGTGGCTCTGGAAGTGACCTACTACAGCAACGCAGGAAACTCcatggacctctctctctcaaTCATGGAGCGTGCGTTGTTCCACATGGAGAACTCTTACAGCATCGCTAACATTAGAGGGCGTGGCTACGTATGTAAGACACACCTCCCGTCCAACACGGCCTTCCGAGGGTTTGGCGGGCCACAAGGAATGTTGATTGCTGAGAGTTGGATGAGTGATGTAGCTCTGAGCCTCGGGCTGCCCGCCGAACAGgtacgtCGTCTGAACATGTACATCCAGGGAGAGAGGACCCCTTACAGCCAGATCCTGGATCACATCACGCTGGACCGCTGCTGGGACCAATGTCTGGAGATATCATCCTTCACCCAACGTCGAGCTGGAATAGAGACAtacaacagggaCCACCGTTGGACTAAGCGAGGGCTGTCTGTCGTCCCCACCAAGTTTGGCATCAGCTTCACCGCTGCCTTCCTTAACCAGGCCGGTGCATTGGCTCATATTTACACAGACGGCTCCGTGCTGTTGACTCACGGAGGGACTGAGATGGGACAGGGTCTAAACACCAAGATGGTGCAGgtggcCAGTAGGACCCTGGGTATCCCCAGCAGTAAGATCCACATCACAGAGACCAGCACCAACACTGTTCCCAACACCAGCCCTACTGCTGCCTCTGCTTCCTCCGACCTCAACGGAGCCGCTGTGCATaatgCGTGTGAGATCCTACTCCACCGTCTAGAACCCTACAAGACCAAGAATCCTAAAGGATGCTGGGAGGACTGGGTGAACGCTGCCTACTTTGACCGGGTCAATCTGTCTGCTAATGGATTCTACAAGACTCCAGACCTTGGTTATGACTTTGAGACCAACACAGGTCGTCCTTTCAACTACTTCAGTTATGGAGTGGCCTGCTCTGAGGTGGAGATAGACTGTCTGACCGGCAGCCACAAGAACATTCATACTTCCATCGTCATAGATGTGGGGAATAGTCTGAACCCAGCTCTGGACATAGGACAGGTAGAGGGGGGCTTTATGCAGGGTGTGGGTCTGTACACCCTGGAGGAGCTGAAGTATTCTCCCGAGGGATACCTGTTCACGCGAGGACCAGGCATGTACAAGATCCCCGCCTTTGGAGACATCCCCACTGACCTCACAGTGTCTCTGCTCCGAGACGCCCCCAACGACAAGGCCATCTTCTCCTCCAAGgCGATAGGTGAGCCTCCTCTCTTCCTTGCGGCCTCTGTGTTTTTTGCCATCAAAGATGCCATCATCGCTGCCAGGAAGGAGTCAGGCCTTAGTGGGCCCTTCAGATTGGACAGCCCGGCCACACCTGAGAGGATACGCAATGCCTGCGAGGATCGCTTCACCAAACTGTGCCCCCCTGCAGAGCCAGGCACCTTCACTCCATGGGCTGTCGTAGTGTAAGACGAACGGAACTAGAGAGAGAAGAaatgcagaggagagagagaagaggggagagacggaggggggaaaGAATAGGATagcaagcagagagagaaggttaATCTGTTTCAAAATTATGCCATTCAATTCCTTTGTCTCAGTCTGAGGAAATGGCTGTTCTAATCAGTTTGTCATGGAGACAGAACCCTAATCAGTTTGTCATGGAGACAGAACCCTAATCAGTTTGGAATGGAGACAGAACCCTAATCAGTTTGGAACTCTTACCCTAACGCACACATGGGTGGATCTCGGTAGTGTAAAGGGGCATCATCtccttgtctcctgtctctcatcCTTACTGAGCTGAGAATTCAGAACAATATAGTGGATGTTGGGGGTCTGCTTTCACCTGTCCACTAGTTTTAGATCAGTGAAGAGGAAGAGCCTATTAAAGATGAAGCACAGATCTGAAGCCTACCTGGCTATCAGCACTTTGACCTAGGAAGCAGTCCTAGTCCGGTTCCCCACATAGCCACCATGGTGCGTTCCGAAATAGGTCAGGAGGCCACAGATTCTGATTGGAGGAAAGTGTCGCCGAGGCCTCGGGAACTGACCAGACCAATCACACACACCACTGTAACTGTTGATGATCTTTTTCAAGGGATGTCAATCATTTTCAGACCTCACTGCATATCATATACAAATGACCTATGATCAATTCAATATCTGTTATGATGCCTGTTGTATCCCTTTATCAAATAAGTCTACATCTTGTAGTTGTGTGTAAAAGAGCTGATATTTGTGTGTTAAATTTAATATAATTTCCTAAATGTATGATATTTTATACATGTTAATTTAATTTTCCTTTTGCTAGCAGAAATGGTGATTTTATTTAGTGGTTATATTTTGATTAATAGAGTTTTATAGGAAtcatttgtttaatttattttatgTGTAATCTCAGGTTTTGGTAAAACAGCACCATCTGGTGGCCGGTAGTGTGTCTGCTGCGCTACTGTTTTCAATTCAACttagttaaatactacttgactGACACAGAATAACTCAATTACTTCAACTACTTGATAAGACtgagacaaaaaaaatgtaattgaagaattaGCTTTATTTTACATGTCAATAATGTATAGAGTTTGTCTGTTCAATAAACATAGATTTCcaatcctctg

Function

GO: NA

KEGG:

id description
K00106 XDH; xanthine dehydrogenase/oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1882450 lncRNA upstream 553 60878903 ~ 60887812 (+) True G1645479
TU1882448 lncRNA upstream 15320 60872234 ~ 60873045 (+) True G1645477
TU1882487 lncRNA upstream 46024 60842044 ~ 60842341 (+) True G1645509
TU1882486 lncRNA upstream 47314 60840721 ~ 60841051 (+) True G1645508
TU1882485 lncRNA upstream 47808 60840184 ~ 60840557 (+) True G1645507
TU1882541 lncRNA downstream 108099 61045296 ~ 61046565 (+) True G1645557
TU1883138 lncRNA downstream 168638 61105835 ~ 61106063 (+) True G1646028
TU1883158 lncRNA downstream 182478 61119675 ~ 61119893 (+) True G1646047
TU1883217 lncRNA downstream 251651 61188848 ~ 61189199 (+) True G1646084
TU1883223 lncRNA downstream 263663 61200860 ~ 61201399 (+) False G1646089
XM_036955270.1 mRNA upstream 21400 60849843 ~ 60866965 (+) True LOC110498232
NM_001124718.1 mRNA upstream 105855 60779941 ~ 60782510 (+) True LOC100136771
XM_036955238.1 mRNA upstream 318626 60556736 ~ 60569739 (+) False LOC110498226
XM_036955236.1 mRNA upstream 318626 60556739 ~ 60569739 (+) True LOC110498226
XM_036955237.1 mRNA upstream 319708 60556736 ~ 60568657 (+) False LOC110498226
XM_036955274.1 mRNA downstream 305225 61242422 ~ 61300699 (+) False LOC110498404
XM_036955275.1 mRNA downstream 305832 61243029 ~ 61305131 (+) False LOC110498404
XM_036955276.1 mRNA downstream 425235 61362432 ~ 61382346 (+) True LOC118941508
XM_036955277.1 mRNA downstream 455375 61392572 ~ 61401264 (+) False LOC118941509
XM_036955278.1 mRNA downstream 455375 61392572 ~ 61401264 (+) False LOC118941509
TU1882392 other upstream 149408 60728557 ~ 60738957 (+) True G1645444
TU1882393 other upstream 149984 60726895 ~ 60738381 (+) False G1645444
TU1882402 other upstream 154466 60726895 ~ 60733899 (+) False G1645444
TU1882410 other upstream 155117 60726895 ~ 60733248 (+) False G1645444
TU1882408 other upstream 155284 60718758 ~ 60733081 (+) False G1645444
TU1883226 other downstream 265161 61202358 ~ 61203352 (+) True G1646089
TU1883202 other downstream 342622 61279819 ~ 61291841 (+) False LOC110498404
TU1883395 other downstream 407590 61344787 ~ 61345154 (+) True G1646225
TU1883513 other downstream 620844 61558041 ~ 61561084 (+) True G1646294
TU1883836 other downstream 1206986 62144183 ~ 62145290 (+) True G1646509

Expression Profile