RNA id: TU1882393


Basic Information

Item Value
RNA id TU1882393
length 972
RNA type TUCP
GC content 0.36
exon number 3
gene id G1645444
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60718758 ~ 60738957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagggactagttatatcatcatgtttcactagagagggactagttataacatcatgtttcactagagagggactagttataacaccatgtttcactacagagggactagttataacatcatgtttcactacagagggattagttataacatcatgtttcactacagatacagagggactagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagagactagttataacagcatgtttcactacagagggactagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagatacagagggactagttataacatcatgtttcactacagagggactagttataacataatgtttcactacagagggactagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagggattagttataacatcatgtttcactacagagggactagttataacaccatgtttcactacagagggactagttatatcatcatgtttcactacagagggactagttataacatcatgtttcactacagagggattagttataacatcatgtttcactacagagggactagttataacatcatgtttcactacagagggattagttataacatcatgtttcactacagagggactagttatatcatcatgtttcactacagagggactagttataacatcatgtttcactacagagggactagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1882358 lncRNA upstream 11790 60657724 ~ 60715105 (+) True G1645415
TU1882351 lncRNA upstream 21582 60650557 ~ 60705313 (+) True G1645409
TU1882230 lncRNA upstream 176774 60549195 ~ 60550121 (+) True G1645318
TU1882316 lncRNA upstream 186380 60540281 ~ 60540515 (+) True G1645380
TU1882315 lncRNA upstream 186672 60540012 ~ 60540223 (+) True G1645379
TU1882435 lncRNA downstream 20989 60759370 ~ 60759890 (+) True G1645464
TU1882451 lncRNA downstream 45433 60783814 ~ 60788604 (+) True G1645480
TU1882472 lncRNA downstream 78460 60816841 ~ 60818727 (+) True G1645498
TU1882473 lncRNA downstream 81594 60819975 ~ 60820727 (+) True G1645499
TU1882484 lncRNA downstream 99074 60837455 ~ 60839745 (+) True G1645506
XM_036955238.1 mRNA upstream 157156 60556736 ~ 60569739 (+) False LOC110498226
XM_036955236.1 mRNA upstream 157156 60556739 ~ 60569739 (+) True LOC110498226
XM_036955237.1 mRNA upstream 158238 60556736 ~ 60568657 (+) False LOC110498226
XM_036955268.1 mRNA upstream 181954 60541955 ~ 60544941 (+) False LOC110498236
XM_036955232.1 mRNA upstream 251349 60462967 ~ 60475546 (+) False chrna2a
NM_001124718.1 mRNA downstream 41560 60779941 ~ 60782510 (+) True LOC100136771
XM_036955270.1 mRNA downstream 111462 60849843 ~ 60866965 (+) True LOC110498232
XM_036955272.1 mRNA downstream 149983 60888364 ~ 60937197 (+) False xdh
XM_036955273.1 mRNA downstream 149984 60888365 ~ 60937197 (+) True xdh
XM_036955274.1 mRNA downstream 504041 61242422 ~ 61300699 (+) False LOC110498404
TU1882388 other upstream 8284 60715933 ~ 60718611 (+) True G1645443
TU1882215 other upstream 180652 60542036 ~ 60546243 (+) True LOC110498236
TU1882291 other upstream 251366 60474427 ~ 60475529 (+) True chrna2a
TU1882292 other upstream 253015 60473123 ~ 60473880 (+) False chrna2a
TU1882250 other upstream 324491 60398907 ~ 60402404 (+) True plaat1l
TU1883226 other downstream 463977 61202358 ~ 61203352 (+) True G1646089
TU1883202 other downstream 541438 61279819 ~ 61291841 (+) False LOC110498404
TU1883395 other downstream 606406 61344787 ~ 61345154 (+) True G1646225
TU1883513 other downstream 819660 61558041 ~ 61561084 (+) True G1646294
TU1883836 other downstream 1405802 62144183 ~ 62145290 (+) True G1646509

Expression Profile