RNA id: TU1882388


Basic Information

Item Value
RNA id TU1882388
length 2564
RNA type TUCP
GC content 0.43
exon number 2
gene id G1645443
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60715933 ~ 60718611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTATCATAATGTCAGAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACACAGCACTGAACACCTCTTATCATAATGTCAGAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACACAGCACTGAACACCTCTTATCATAATGTTAGAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACAGAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACACAGCACTGAACACCTCTTATCATAATGTCAGAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACAGAGCACTGAACACCTCTTATCATAATGTTAGAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACACAGCACTGAACACCTCTTATCATAATGTCAGAACACAGCACTGAACACCTCTTATCATAATGTTAGAAAACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACAGAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACAGAGCACTGAACACCTCTTATCATAATGTTAGAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACAGAGCACCGAACACCTCTTATCATAATGTTAGAACACAGCACTGAACACCTCTTATCATAATGTTCATTAATTTATTACAACAGAGCACTGAACACCTCTTATCATAATGTCAGAACACAGGACTGAACACCTCTTATCATAATGTCAGAACACAGGACTGAACACCTCTTGCTCTGTGTTAATATGTGTTTTGTAAAATATTTGCTAAAAAACAAATGTGTAGAATATAATCCATCTTCAGTAGTGTGCAGTGTTGAAAGTCTTCATCTCACACATTCTGACTGCATCACATTATGGCATCAGTCCCTCAGCTAAGgctgtgtgtgtcagagatgtgAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGCGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGCGTATCAGAGATGTGAACAGTGTGTCAGGGATGTGAACAATGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGGGATGTGAACAGTGTATCAGGGATGTGAACAATGTATCAGAGATGTGAACAGCGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTATCAGAGATGTGAACAGTGTTTCAGAGATGTGAACAGTGTTTCAGAGATGTGAACAGCATGTCAGAGATGTGAACAATGTATCAGAGATGTGTGTGTCAGCgtgtcagagatgtgtgtgtcagcgtgtcagagatgtgtgtgtcagtgtgtcagagatgtgtgtgtcagcgtgtcagagatgtgtgtgtcaacgtgtcagagatgtgtgtgtcagcgtgtcagagatgtgtgtgtcagcgtgtcagagatgtgtgtgtcagcgtgtcagagatgtgtgtgtcaacgtgtcagagatgtgtgtgtCAGCGTGTCAGAGATGTGCGTGTCAGCgtgtcagagatgtgtgtgtcagcgtgtcagagatgtgtgtgtcagtgtgtcagagatgtgtgtgtcagcgtgtcagagatgtgtgtgtcagtgtgtcagagatGTTTGTGTCAGCGTGTTAGAGATGTGAACAATGTATCATAGTGTGCTGCTCCACAGCCAGAGGGGGCCAGGCCCTTCAACATAGATGTGAACGGAGCATTACACTTTGACCTCCTATTTGCCatgaaaacttctgaccctctcctctccatggcAACCGCTGACCCCTTGCTCTCCATGGCAACATTTGACCGTCTCCAGTACATCAGTCGGAACAGAAGCATCCCCCCACCGGCTGCTGCTGTGGTAGCATTGGTTTCCGTGGTGATGACTGGCACGTGGGCAGTGGCATGGCGGGAAGCGTCGGCCGCGGGGTTGCTCCATCTGAGCGTGTGCAGTAGCGAGGCCTTGAGACCGGCGAGGGCCTTACCATATGGGAATAGACGGGCTCGAACCTCCATGACACATCCAATCAGAGAGCGTCTCAGAGCGTCAGAAAACTTAAAGAGAACCTCAGTGTGAAGAGAATGACCGAGAATGACAGGGGGCCTCTGAGAACGTCTCCGAACTGCAGGAAACCTCAGGtaaagcagaccagaccagactgctGTAGAGACACGGGGGCAGaaacagagacggacagagaagCAGGACATCATCTCACTGTTAGACATACAGAACTCTCTGATTTAAGCCTTTCATGTAAAACTTTGTTTTTGAAGCAGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1882358 lncRNA upstream 828 60657724 ~ 60715105 (+) True G1645415
TU1882351 lncRNA upstream 10620 60650557 ~ 60705313 (+) True G1645409
TU1882230 lncRNA upstream 165812 60549195 ~ 60550121 (+) True G1645318
TU1882316 lncRNA upstream 175418 60540281 ~ 60540515 (+) True G1645380
TU1882315 lncRNA upstream 175710 60540012 ~ 60540223 (+) True G1645379
TU1882435 lncRNA downstream 40759 60759370 ~ 60759890 (+) True G1645464
TU1882451 lncRNA downstream 65203 60783814 ~ 60788604 (+) True G1645480
TU1882472 lncRNA downstream 98230 60816841 ~ 60818727 (+) True G1645498
TU1882473 lncRNA downstream 101364 60819975 ~ 60820727 (+) True G1645499
TU1882484 lncRNA downstream 118844 60837455 ~ 60839745 (+) True G1645506
XM_036955238.1 mRNA upstream 146194 60556736 ~ 60569739 (+) False LOC110498226
XM_036955236.1 mRNA upstream 146194 60556739 ~ 60569739 (+) True LOC110498226
XM_036955237.1 mRNA upstream 147276 60556736 ~ 60568657 (+) False LOC110498226
XM_036955268.1 mRNA upstream 170992 60541955 ~ 60544941 (+) False LOC110498236
XM_036955231.1 mRNA upstream 240387 60462967 ~ 60475546 (+) False chrna2a
NM_001124718.1 mRNA downstream 61330 60779941 ~ 60782510 (+) True LOC100136771
XM_036955270.1 mRNA downstream 131232 60849843 ~ 60866965 (+) True LOC110498232
XM_036955272.1 mRNA downstream 169753 60888364 ~ 60937197 (+) False xdh
XM_036955273.1 mRNA downstream 169754 60888365 ~ 60937197 (+) True xdh
XM_036955274.1 mRNA downstream 523811 61242422 ~ 61300699 (+) False LOC110498404
TU1882215 other upstream 169690 60542036 ~ 60546243 (+) True LOC110498236
TU1882291 other upstream 240404 60474427 ~ 60475529 (+) True chrna2a
TU1882292 other upstream 242053 60473123 ~ 60473880 (+) False chrna2a
TU1882250 other upstream 313529 60398907 ~ 60402404 (+) True plaat1l
TU1882231 other upstream 324270 60383521 ~ 60391663 (+) True LOC110498402
TU1882408 other downstream 147 60718758 ~ 60733081 (+) False G1645444
TU1882393 other downstream 8284 60726895 ~ 60738381 (+) False G1645444
TU1882402 other downstream 8284 60726895 ~ 60733899 (+) False G1645444
TU1882410 other downstream 8284 60726895 ~ 60733248 (+) False G1645444
TU1882392 other downstream 9946 60728557 ~ 60738957 (+) True G1645444

Expression Profile