RNA id: TU1882316


Basic Information

Item Value
RNA id TU1882316
length 235
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1645380
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60540281 ~ 60540515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CaacttgttaatgagagaggcaGGCTATCCCAGCGTTGTAAGTCTGTAAGTCTGCTTTAACTCGTGTGATTAGGCTTGCAAAGTTAGTTTTATGCAGGGTAGCCAGAGAGTGTGTTATATTCACACCAAAATAGGAATAACCAGAGGGCGACAGACGGAAAGGCAGGGCTCCAAGGGGAATTTGCTTGACAGCAGGGTTGATTGGAAAACATTAAGTTTTCTGTATGTTCAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1882315 lncRNA upstream 58 60540012 ~ 60540223 (+) True G1645379
TU1882226 lncRNA upstream 5952 60477968 ~ 60534329 (+) True G1645316
TU1882308 lncRNA upstream 27334 60511228 ~ 60512947 (+) True G1645373
TU1882302 lncRNA upstream 36359 60500256 ~ 60503922 (+) True G1645371
TU1882244 lncRNA upstream 93610 60406059 ~ 60446671 (+) True G1645329
TU1882230 lncRNA downstream 8680 60549195 ~ 60550121 (+) True G1645318
TU1882351 lncRNA downstream 110042 60650557 ~ 60705313 (+) True G1645409
TU1882358 lncRNA downstream 117209 60657724 ~ 60715105 (+) True G1645415
TU1882435 lncRNA downstream 218855 60759370 ~ 60759890 (+) True G1645464
TU1882451 lncRNA downstream 243299 60783814 ~ 60788604 (+) True G1645480
XM_036955231.1 mRNA upstream 64735 60462967 ~ 60475546 (+) False chrna2a
XM_036955232.1 mRNA upstream 64735 60462967 ~ 60475546 (+) False chrna2a
XM_036955228.1 mRNA upstream 135184 60402459 ~ 60405097 (+) True LOC118941500
XM_036955226.1 mRNA upstream 135185 60402459 ~ 60405096 (+) False LOC118941500
XM_036955268.1 mRNA downstream 1440 60541955 ~ 60544941 (+) False LOC110498236
XM_036955237.1 mRNA downstream 16221 60556736 ~ 60568657 (+) False LOC110498226
XM_036955238.1 mRNA downstream 16221 60556736 ~ 60569739 (+) False LOC110498226
XM_036955236.1 mRNA downstream 16224 60556739 ~ 60569739 (+) True LOC110498226
NM_001124718.1 mRNA downstream 239426 60779941 ~ 60782510 (+) True LOC100136771
TU1882291 other upstream 64752 60474427 ~ 60475529 (+) True chrna2a
TU1882292 other upstream 66401 60473123 ~ 60473880 (+) False chrna2a
TU1882250 other upstream 137877 60398907 ~ 60402404 (+) True plaat1l
TU1882231 other upstream 148618 60383521 ~ 60391663 (+) True LOC110498402
TU1881400 other upstream 791936 59747984 ~ 59748345 (+) True G1644651
TU1882215 other downstream 1521 60542036 ~ 60546243 (+) True LOC110498236
TU1882388 other downstream 175418 60715933 ~ 60718611 (+) True G1645443
TU1882408 other downstream 178243 60718758 ~ 60733081 (+) False G1645444
TU1882393 other downstream 186380 60726895 ~ 60738381 (+) False G1645444
TU1882402 other downstream 186380 60726895 ~ 60733899 (+) False G1645444

Expression Profile