RNA id: XM_036955236.1


Basic Information

Item Value
RNA id XM_036955236.1
length 2764
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110498226
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60556736 ~ 60569739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatggggagaaaagaggggggagagagaagtggTAAAGTAGTTCTATAGAATTTCTAGGTTCAGGTCAACTCGACCCCCAGGCAATGGGGAGGAAGTCTAATGCAGAGGACTGTGGGTTAGGTATTTATTCACCCCTGACCACTTTGTCGCGATTTGAAATGATTAGACTTTGCTTTTACAGTACTTATTGCGCTAACAAGACTTGACGGGAGTTCCAGGACTTTACGGGTGTAACAGTCCCTTCAGCTCCGCTGTCTGGTGAGATAGGCGCtgagcggagagagagagtgagtgatatAGAAGAGTCCTATGGCTCCATTGCAGCTCGCGGTGTACTTGCGGCTCGCTCTCATATTCTTCTTCACGGCGTTTCTTTTCTtccttgatgtcttcactgtcaGCAGAGCAGCCTCCTCGTGCGCTAACGTCCCCAGTCAGTTACCGAACAAGAGTCAAACCGGAGAAGATGAAGTCTCTTCTAGTAGTGCGCGCAAACAGAACCGCACTCCCGGGGAGGTGCGCGAGATGAACGTGTCACTTATATCGGTATTGTTACAGACACAGGATGAGATCACGCAGGGGAACGACACGGATAGAGATAATGGCAAAGTGTGTTTGGATCCAGTGGTGTTGTCGTACAGTCAGACCATGTACATGGCTGGCCTTCTGCTGGGATCTCTCTTTGGAGGAGCTCTCTCTGACAGGTACGGTAAAcgagtggtactgctggtgtgtgtgtgtgtccatgctgtGACTGCTGTGCTGCCGGCAGTCCTTCCTCACGCCATCCTCTTCCTCACCCTGCGCTGTCTGGCCGGGGTCTCCTGCTGCTGTATCAATATCTGCAGCTTCAGCCTGGgtgtggaaTGGAGTCTTCCCAGGTATCGTATTTGGCCCCCGGCCCTCCTGTCCTTCTCCTTCAGCCTGGGTATGATGGCGTTGGCACCGCTGGCGTAccttacacacacctggacacaGCTACACCTGGCACTGGCCGTACCACAGatcctctgtctgcctctctactaCTCCATTCCTGAGTCTCCTCACTGGTTGCTCCTGAAGAAGAGGCTGGACACTCTGGAGGAGTACAGGAGACACAGTCCTGAGGACAAACGCTGTCTAgacctgCTGTTGGAGACAGAGGGGAAGGACCTGCAACAAGTCCCCTGGGACACAGACACACTGGAGACTGGCACACACATACTAAAGGCAGACACGCAAACCCAGGAGGGAAACACACTTTCCCACTGCGGACACATGAGAAGTCCCAACATTCTACTGCGCCTGGTCATCATGAGTTACATTGGgctaACGTCAGCCCTGACGTACTACGGTATCTGTCTGAATGTCGGGCGTTTCGGGGTGGATGTCTTCCTGGCTCAGTTCTTCAGCGGCCTATCAGAGACACCCTGCTTGCTTGTCCCATTCCTATTGGCCCGCTGTGGCAGACGCCCAATCAGCATGCTGTCCCTGCTCCTCAGTGGCTCCTTCTGCCTGCTGTCCCTGCTCGCATCACGCTTCTACgctgtcccAGGGTTGGTGATGGCTCTGGCCCTGGTGGGGAAGCTGTGTATGCAGACCAGTGTGTTTGTCTCTTTACTCTATGGCATCGAGCTCTTCCCTACACTCATCAgaCAGAAGTGTGTGGGCTTGGTGTGTCTGTGTTACAGAGTGGGGTGTATCCTCAATGCGGTGGTCAGTCCTAGAGGAGAAACCATCCCATTGGCCGCTATGATTCTTTATGGGAGTGGCCCCATTGTCGGGGCGGGACTGTGTCTGTTGCTACCGGAGACCAGCGGTGTGCCGCTCCCTGATTCGCTGGAGGACTGTGACAGACAACCCAGGCTACACCTCCCATTAGCCTGGTCATCATGCTTCACAAGGCGCTCAGTGGACACCCCAGCTGACAAGGCCTGTCCATTCCTGGGAGACACAGACCCCGGGAAAACCCTCCCACCACCCACAGGAACCCAACTCAAATGAAAacactctgcacacacacacacacacacacacacgctgttgACACATGTATTTAAAAAGGTCCATGGAACACTGAGATACTAAGCCGAACAGTGTCCAATAAGTTGTAATCATTTTTGTGTCACGTTGTGCCCAACTGAACAGGACCCTGGTTTTACTGTTTAAACTGTACATCTGTGTGATCTGGTCTGTCCCAGCCTGTGGAGAACATTCTTAGCTCCCTATAAAAAAATCTGCATTCTCCTTCTCTTGATTTGGTTAGATTTTTTTTCACAAATTTCGTTGAATTTTTCAATAGTTTTCTCTCAAAAATCACACCTTTTTAAATAGGAAAATAACACGTGATGTTCTAAATGCCACAACAAAGATCaaaaccacttttgaggtctgggaaaaatctagGAACAGCCTttgtttggttagcggtgtttctGTAGCGCTCATGTCAAGTGATGCAGAGTTGACGAAACAAAATGGCTACTGGATTCATGCACATAATCATGagatcattctgccaggtaggcagaGGCTGCATTGTAAGTTCACATTTAATTGtgaagttgttttttttcttttcggAAAAGCCTTCCGATCTATCAGCAGACGGTTATTATTAGCGTCAACGCTAACGGCTGCACAAAGGagcaccacacaacacaacacaacacacacacacaggggcttTCCTGTGCCCTTTCAGATAATTGCGGGAAAATACCAATCATTGATATACTTTGTTAATGTCATATATTTGAAATCTTCGTAGGGACAgccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1882230 lncRNA upstream 6618 60549195 ~ 60550121 (+) True G1645318
TU1882316 lncRNA upstream 16224 60540281 ~ 60540515 (+) True G1645380
TU1882315 lncRNA upstream 16516 60540012 ~ 60540223 (+) True G1645379
TU1882308 lncRNA upstream 43792 60511228 ~ 60512947 (+) True G1645373
TU1882302 lncRNA upstream 52817 60500256 ~ 60503922 (+) True G1645371
TU1882351 lncRNA downstream 80818 60650557 ~ 60705313 (+) True G1645409
TU1882358 lncRNA downstream 87985 60657724 ~ 60715105 (+) True G1645415
TU1882435 lncRNA downstream 189631 60759370 ~ 60759890 (+) True G1645464
TU1882451 lncRNA downstream 214075 60783814 ~ 60788604 (+) True G1645480
TU1882472 lncRNA downstream 247102 60816841 ~ 60818727 (+) True G1645498
XM_036955268.1 mRNA upstream 11798 60541955 ~ 60544941 (+) False LOC110498236
XM_036955231.1 mRNA upstream 81193 60462967 ~ 60475546 (+) False chrna2a
XM_036955232.1 mRNA upstream 81193 60462967 ~ 60475546 (+) False chrna2a
XM_036955228.1 mRNA upstream 151642 60402459 ~ 60405097 (+) True LOC118941500
XM_036955229.1 mRNA upstream 151643 60402459 ~ 60405096 (+) False LOC118941500
NM_001124718.1 mRNA downstream 210202 60779941 ~ 60782510 (+) True LOC100136771
XM_036955270.1 mRNA downstream 280104 60849843 ~ 60866965 (+) True LOC110498232
XM_036955272.1 mRNA downstream 318625 60888364 ~ 60937197 (+) False xdh
XM_036955273.1 mRNA downstream 318626 60888365 ~ 60937197 (+) True xdh
XM_036955274.1 mRNA downstream 672683 61242422 ~ 61300699 (+) False LOC110498404
TU1882215 other upstream 10496 60542036 ~ 60546243 (+) True LOC110498236
TU1882291 other upstream 81210 60474427 ~ 60475529 (+) True chrna2a
TU1882292 other upstream 82859 60473123 ~ 60473880 (+) False chrna2a
TU1882250 other upstream 154335 60398907 ~ 60402404 (+) True plaat1l
TU1882231 other upstream 165076 60383521 ~ 60391663 (+) True LOC110498402
TU1882388 other downstream 146194 60715933 ~ 60718611 (+) True G1645443
TU1882408 other downstream 149019 60718758 ~ 60733081 (+) False G1645444
TU1882393 other downstream 157156 60726895 ~ 60738381 (+) False G1645444
TU1882402 other downstream 157156 60726895 ~ 60733899 (+) False G1645444
TU1882410 other downstream 157156 60726895 ~ 60733248 (+) False G1645444

Expression Profile