RNA id: XM_036955343.1


Basic Information

Item Value
RNA id XM_036955343.1
length 4161
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC110512290
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62655733 ~ 62771956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAGCTTCTATCTCCGCCAGTGTTCAAGGACATGCCTACTTACCCGTTTTAGATCGGTGGGTGAAAAAAAATAGTTGGATAGAAAAGGATAGACAGAAGGTGAAGGGTTTTGTGTGAGTTtagctgagagagcgagagaaactgAGAGTCAGCAGCAAGCGAGATACAGTGAAGCCCGTGTGACCGTTAATTTCATCCACACCGTCTTGGTCGTGCGGTATACGGTAACAACATACCGCTGCAACATCACCTCCGGTCCACCGCGGAGTACCGTACCGGTAAAACACAGTGAACGCGAGGAAGTGTAATCCATGCCTACTTTCGACATGAACCCGTATGACGGAGATGAAAACGATTATATGCCTCAGGAAGATGACTGGGACCGGGATATGCTGTTGGACCCGGCGTGGGAGAAGCAGCAGAGAAAGACGTTCACGGCCTGGTGTAACTCCCACCTGAGGAAAGCAGGAACGCAGATCGAGAACATCGAGGAGGACTTCAGAGACGGACTGAAACTCATGCTGCTGTTGGAGGTCATctcagGAGAGCGCTTGGCCAaaccagagagagggaagatgagaGTTCACAAGATCTCCAACGTCAACAAAGCTCTCCACTACATCACCAGTAAAGGAGTCAAGCTGGTGTCCATCGGAGCTGAGGaGATCGTCGACGGCAACGCTAAAATGACCCTGGGAATGATCTGGACCATAATCCTTCGCTTCGCCATCCAGGATATCTCTGTGGAAGAAACATCAGCTAAAGAGGGTCTTCTTCTGTGGTGCCAGAGGAAGACTGCTCCTTACAAGAACGTCAACATTCAGAACTTTCACATTAGctggaaAGATGGGTTGGGATTCTGTGCTCTCATTCACAGACACCGTCCAGAGCTCATTGACTATGGCAAGCTACGCAAGGATGACCCCATGACCAACCTGAACACAGCCTTTGACGTGGCAGAGAAGTACCTGGACATTCCCAAGATGTTGGACGCTGAGGataTCGTGGGCACGGCCCGCCCGGATGAGAAGGCCATCATGACCTACGTATCTAGCTTCTACCACGCCTTCTCTGGTGCTCAAAAGGCGGAGACGGCGGCCAATAGGATCTGCAAGGTGTTGGCTGTCAACCAGGAGAATGAGCAGCTGATGGAGGACTACGAGAAGCTGGCTAGTGACCTCCTGGAGTGGATCCGTCGCACCATCCCGTGGCTGGAGAACCGTGCCCCAGAGAACACCATGCTGGCTATGCAGCAGAAGCTGGAGGACTTCAGGGACTATCGACGTCAACACAAACCCCCCAAGGTCCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACCCTGCAGACCAAGCTGAGGCTGAGCAACAGGCCTGCCTTCATGCCCTCTGAGGGGAAGATGGTGTCGGACGTCTCTAACGCGTGGGGCGGCCTGGAGGGGGCGGAGAAGGGTTATGAGGAGTGGCTCCTCAACGAGATACGTCGGCTGGAGAGACTCGACCACCTGGCTGAGAAGTTTCGGCAGAAAGCAGCCACCCACGAAGCCTGGACTGAAGGTAAGGAGGAGATGCTGCAGGCGCGGGACTTTGAGACGGCCTCTCTGTCTGAGATCAAGGCTCTGCTGAAGAAACACGAGGCCTTCGAGAGCGACCTGGCCGCGCACCAGGACCGCGTAGAGCAGATAGCTGCCATCGCTCAGGAGTTAaaTGAGCTAGACTACTATGACTCCCCCAGTGTGAACAGTCGATGCCAGAGGATATGTGACCGATGGGACGCCCTAGGAGCCCTGACCCAGAAACGCAGCGACGCTCTGCAGagAACTGAGAAGCTTCTGGAGACCATAGACGAGTTATATCTGGAGTTTGCCAAGCGAGCTGCTCCGTTCAACAACTGGATGGAGGGAGCCATGGAGGATCTGCAGGACACCTTTATAGTTCACACCATAGAGGAGATACAGGGTCTCAGTACAGCCCACGAGCAGTTTAAAGCCACTCTCCCTGATGCGGATAAGGAACGCGGTGCCATCCTGGGAATCCACAATGAGATCGCCAAGATAGTGGCCACCTATCATGTGAACATGGCTGGTACCAACCCTTACACCACCATCAACCCTCAGGGCATCAACGCCAAATGGGACAAGGTGAGACAGCTGGTTCCCCAGAGGGACCAGGCTCTGATCGAAGAGCACGCCCGGCAGCAGAACAACGAGCGTCTCCGCAGGCAGTTCGCCAACCAAGCCAACGTCATCGGGCCCTGGATCCAGACCAAGATGGAGgaGATTGGTCGCATCTCCATCGAGATGCACGGAACCCTGGAGGATCAGCTGACCCACCTCCGCCAATACGAGAAGAACATTGTCAACTACAAGCCAAAGATCGACCAATTGGAGGGAGACCACCAACTGATTCAGGAAGCTCTCATCTTCGACAACAAGCACACCAACTACACCATGGAGcATATCCGTGTGGGCTGGGAGCAGCTCTTGACCACCATCGCCAGAACCATCAACGAGATCGAGAACCAGATTCTGACGAGGGACGCCAAGGGCATCAGCCAGGACCAGATGAACGAGTTCAGAGCCTCCTTCAACCACTTCGACAGGGACCACTCGGGCACTCTGGGGGCTGAGGAGTTCAAGGCCTGCCTGATCAGTCTGGGCTTCGATATCGCCAACGATGCACAGGGTGAAGCGGAGTTCTCTCGCATCATGAGCATCGTGGATCCCAACCGGGTGGGCGTGGTCACATTCCAGGCCTTTATTGACTTCATGTCCCGAGAGACGGCTGATACTGACACCGCTGACCAGGTCATGGCCTCCTTCAAGGTCCTGGCTGGGGACAAGAACTTCATCATGGCTGATGAGCTTCGTCGTGAGTTGCCTCCTGATCAGGCAGAGTACTGCATCGCCCGCATGGCGCCCTACTCCGGCACCGACGCCGTCCCCGGCGCCCTGGACTACATGTCCTTCTCCACCGCACTCTACGGAGAGAGTGACCTCTGAGTGACCTTTGGATGACCTTTGACCCCTGACCTGGGAGGTTATGTCCTATGAGGTCGCTCACCAGTCTACCTGCTCTCTCCACCGCCCACAAGACCCTCCTACTGCCCTCCCAGTGAGCACAAGACGTTGACAAAACGTCCTTTTGTTTGAAAAGACGTCAAAAATACATATTTCTGGTTGAAAATATGTAAGTTTTGgtaaaaatatgtttaaaaaaatatgtatttttgatTGAAAAGACATCAACATCTTGTTCTCACTGGGCCATCACTACAGCCCTGCTCTAGTctgggtcccagatctgttggtgatATCTTACCATACCGTCACTCATCGTTGTCATGCCAGTTTGCCAAAACATCACAAGACAGATCTGGCATCAGGCTAGCTCTGCTCTACAGCGCTCAAAACAGAACAGATAGATATGGCATCAGGCTAGCTCTGCTCTACAGCGCTAAAAACAGAACAGATCGATATGGCATCAGGCTAGCTCTGCTCTACAACACTCAAAACATGTTTCTATGTTGCTGGCCTTATATTATATGCCATTGTCATCCTGTCTGCCACTTTCTCCTCTTTCACCCCTTCCACCGCCCTTAGCTTCCTACATTGAATttgcccctagacgctgatcttgggtcagtttagcatttcccccgctaatggttaaggttaggactggGAGAGGGGATGCTGATTCTAGATTATGTACCTAGGGAAAACTTCACCCCGGAGAAAGAccctccccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttctttccttctttcgttccttccttctttccttccttccttctttccttccttacttccttccttacttccttccttacttctttccttccttccttccttccccactccctccctcacactctgCCTCAGTTGCACTTGCTTCCTGTGCAGCAATGCAGCAAATCTCTCCAGGTTTACAAAGAGGGGGAGAAATGTATTTCGTTCTTGTTATTGTTTTTCTTCAGAAAATGAATAAAGTTAACATATTTTATTATACagaacaaaaaaatgtattttttcttcacctgatgaaaaaataaaaataaagaaagaaaaattGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883980 lncRNA upstream 17620 62636287 ~ 62638114 (+) False LOC110504278
TU1884845 lncRNA downstream 37765 62809721 ~ 62810264 (+) True G1647295
TU1884861 lncRNA downstream 96282 62868238 ~ 62868893 (+) True G1647311
TU1884874 lncRNA downstream 112975 62884931 ~ 62885334 (+) True G1647320
TU1884876 lncRNA downstream 117323 62889279 ~ 62889482 (+) True G1647322
TU1884877 lncRNA downstream 118101 62890057 ~ 62892581 (+) True G1647323
XM_036955340.1 mRNA upstream 17608 62604904 ~ 62638126 (+) False LOC110504278
XM_036955335.1 mRNA upstream 52960 62500077 ~ 62602774 (+) False LOC110504279
XM_036955347.1 mRNA downstream 113627 62885583 ~ 63040906 (+) False LOC100136022
XM_036955348.1 mRNA downstream 113627 62885583 ~ 63040906 (+) False LOC100136022
XM_036955349.1 mRNA downstream 278861 63050817 ~ 63103044 (+) True map3k9
XM_021574931.2 mRNA downstream 369467 63141423 ~ 63152629 (+) True med6
XM_036955352.1 mRNA downstream 381397 63153353 ~ 63232158 (+) False pcnx1
TU1883744 other upstream 162015 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 510444 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 1094650 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1310580 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1363893 61279819 ~ 61291841 (+) False LOC110498404
TU1884898 other downstream 244999 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 303193 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 430800 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 619669 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 1356252 64128208 ~ 64129068 (+) True G1648296

Expression Profile