RNA id: TU1884877


Basic Information

Item Value
RNA id TU1884877
length 230
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1647323
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62890057 ~ 62892581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggagatcactgagtagtttggttcatcagcctgacccccagtcttcatggaggagattactgagtagtttggttcatcagcctgacccccagtcttcatggaggagattactgagtagtttggttcatcagcctgacccccagtcttcatggaggagattactgagtagtttggttcatcagcctgacccccagtattcatggaggagattactgagtagtttggttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1884876 lncRNA upstream 575 62889279 ~ 62889482 (+) True G1647322
TU1884874 lncRNA upstream 4723 62884931 ~ 62885334 (+) True G1647320
TU1884861 lncRNA upstream 21164 62868238 ~ 62868893 (+) True G1647311
TU1884845 lncRNA upstream 79793 62809721 ~ 62810264 (+) True G1647295
TU1884828 lncRNA upstream 123710 62765901 ~ 62766347 (+) True G1647278
TU1884879 lncRNA downstream 4482 62897063 ~ 62897282 (+) True G1647325
TU1884884 lncRNA downstream 14431 62907012 ~ 62908317 (+) True G1647330
TU1884889 lncRNA downstream 19985 62912566 ~ 62912993 (+) True G1647335
TU1884906 lncRNA downstream 37992 62930573 ~ 62931003 (+) True G1647349
TU1884868 lncRNA downstream 148225 63040806 ~ 63042917 (+) True LOC100136022
XM_036955342.1 mRNA upstream 118101 62655733 ~ 62771956 (+) False LOC110512290
XM_036955349.1 mRNA downstream 158236 63050817 ~ 63103044 (+) True map3k9
XM_021574931.2 mRNA downstream 248842 63141423 ~ 63152629 (+) True med6
XM_036955352.1 mRNA downstream 260772 63153353 ~ 63232158 (+) False pcnx1
XR_005037831.1 mRNA downstream 260772 63153353 ~ 63232158 (+) False pcnx1
XM_036955351.1 mRNA downstream 260773 63153354 ~ 63232158 (+) True pcnx1
TU1883744 other upstream 396338 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 744767 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 1328973 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1544903 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1598216 61279819 ~ 61291841 (+) False LOC110498404
TU1884898 other downstream 124374 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 182568 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 310175 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 499044 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 1235627 64128208 ~ 64129068 (+) True G1648296

Expression Profile