RNA id: TU1884823


Basic Information

Item Value
RNA id TU1884823
length 463
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1647275
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62746494 ~ 62748632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtcaggtctactacacctgttgtattcagcatttcactgtaagggctactacacctgttgtattcagcatttcactgtaaggtctactgcacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgcgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcggcgcaggtGACACATAAAATGTGATGTGATATAACGTCTGTCTCTTTCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1884821 lncRNA upstream 6381 62739660 ~ 62740113 (+) True G1647274
TU1884818 lncRNA upstream 16411 62729476 ~ 62730083 (+) False G1647273
TU1884819 lncRNA upstream 16642 62729476 ~ 62729852 (+) True G1647273
TU1884813 lncRNA upstream 20514 62703978 ~ 62725980 (+) True G1647268
TU1884814 lncRNA upstream 30657 62715271 ~ 62715837 (+) True G1647269
TU1884828 lncRNA downstream 17269 62765901 ~ 62766347 (+) True G1647278
TU1884845 lncRNA downstream 61089 62809721 ~ 62810264 (+) True G1647295
TU1884861 lncRNA downstream 119606 62868238 ~ 62868893 (+) True G1647311
TU1884874 lncRNA downstream 136299 62884931 ~ 62885334 (+) True G1647320
TU1884876 lncRNA downstream 140647 62889279 ~ 62889482 (+) True G1647322
XM_036955340.1 mRNA upstream 108368 62604904 ~ 62638126 (+) False LOC110504278
XM_036955335.1 mRNA upstream 143720 62500077 ~ 62602774 (+) False LOC110504279
XM_036955347.1 mRNA downstream 136951 62885583 ~ 63040906 (+) False LOC100136022
XM_036955348.1 mRNA downstream 136951 62885583 ~ 63040906 (+) False LOC100136022
XM_036955349.1 mRNA downstream 302185 63050817 ~ 63103044 (+) True map3k9
XM_021574931.2 mRNA downstream 392791 63141423 ~ 63152629 (+) True med6
XM_036955352.1 mRNA downstream 404721 63153353 ~ 63232158 (+) False pcnx1
TU1883744 other upstream 252775 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 601204 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 1185410 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1401340 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1454653 61279819 ~ 61291841 (+) False LOC110498404
TU1884898 other downstream 268323 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 326517 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 454124 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 642993 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 1379576 64128208 ~ 64129068 (+) True G1648296

Expression Profile