RNA id: TU1884821


Basic Information

Item Value
RNA id TU1884821
length 368
lncRNA type intronic
GC content 0.36
exon number 3
gene id G1647274
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62739660 ~ 62740113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagataggtTTAGATAtctagagagatacagataggttTAGATATCCAGATAGACAGTTAAGTATCTAGAGGGAGAGATAGTTAGATATCTAGATAGACAGTTAAGtatctagagggagagagagttagatatCTAGATAGACAGTTAAGtatctagagggagagagagttagatatCTAGATAGACAGTTAAGtatctagagggagagagagttatagatatCTAGATAGACCGTTAAGtatctagagggagagagagttagatatCTAGATAGACAGTTAAGTatctagagggagagagagttagatatCTAGATAGACCGTTAAGtatctagagggagagagagttagatatCTAGATAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1884818 lncRNA upstream 9577 62729476 ~ 62730083 (+) False G1647273
TU1884819 lncRNA upstream 9808 62729476 ~ 62729852 (+) True G1647273
TU1884813 lncRNA upstream 13680 62703978 ~ 62725980 (+) True G1647268
TU1884814 lncRNA upstream 23823 62715271 ~ 62715837 (+) True G1647269
TU1884810 lncRNA upstream 39599 62699792 ~ 62700061 (+) True G1647265
TU1884823 lncRNA downstream 6381 62746494 ~ 62748632 (+) True G1647275
TU1884828 lncRNA downstream 25788 62765901 ~ 62766347 (+) True G1647278
TU1884845 lncRNA downstream 69608 62809721 ~ 62810264 (+) True G1647295
TU1884861 lncRNA downstream 128125 62868238 ~ 62868893 (+) True G1647311
TU1884874 lncRNA downstream 144818 62884931 ~ 62885334 (+) True G1647320
XM_036955340.1 mRNA upstream 101534 62604904 ~ 62638126 (+) False LOC110504278
XM_036955335.1 mRNA upstream 136886 62500077 ~ 62602774 (+) False LOC110504279
XM_036955347.1 mRNA downstream 145470 62885583 ~ 63040906 (+) False LOC100136022
XM_036955348.1 mRNA downstream 145470 62885583 ~ 63040906 (+) False LOC100136022
XM_036955349.1 mRNA downstream 310704 63050817 ~ 63103044 (+) True map3k9
XM_021574931.2 mRNA downstream 401310 63141423 ~ 63152629 (+) True med6
XM_036955352.1 mRNA downstream 413240 63153353 ~ 63232158 (+) False pcnx1
TU1883744 other upstream 245941 62487001 ~ 62493719 (+) True srsf5a
TU1883836 other upstream 594370 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 1178576 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 1394506 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 1447819 61279819 ~ 61291841 (+) False LOC110498404
TU1884898 other downstream 276842 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 335036 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 462643 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 651512 63391625 ~ 63391832 (+) False LOC110498409
TU1886125 other downstream 1388095 64128208 ~ 64129068 (+) True G1648296

Expression Profile