trim9 (trim9)


Basic Information

Item Value
gene id trim9
gene name trim9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61746138 ~ 61852881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955298.1
CTTACTTCCAAGGATGCATTTGCGGTGGTAGATGCTGAAAGATAAGTCCGCTGTCTGTGCGCAATAGCATTTTGAGTTATCACATATAGCTAATTTTCTGGAATTGAGAGAAACTATTTCACTCCGAAgagaatttaaaatggatgagaTGGAGGAAGAATTAAAATGCCCTGTCTGCGGATCGTTTTTCCGGGAGCCGATCATTCTACCGTGCTCCCACAACATCTGCCTGGCTTGCGCTCGGAATATCCTAGTGCAGACCCCGGACGCTGAATCTCCGCAGAGTAGCCGTGCTTCTGGCTCGGGAGTCTCCGACTATGATTACCTGGATCTCGATAAGATGAGCTTGTACAGCGAGGCGGACAGTGGATACGGTTCGTATGGTGGCTTCGTTAGTGCCCCGACCACCCCTTGCCAGAAATCCCCAAACGGGGTGCGTGTTTTCCCCCCTGCCGTCCCCCAACCCCCTTCTCAGCACCACTTGCTAGGACACCCAGGTTCCCTACCTCCAATCCCACGCAACTCCTGCCTCACATGCCCGCAGTGTCATCGCAGCCTCATCTTGGACGAGAGGGGGCTCCGCGGGTTTGCCAAGAACAGGGTGCTGGAAGGGGTCGTGGACCGGTACCAGCAGAGCAAAACAGCCGCTCTCAAGTGTCAGCTCTGCGAGAAGAGTCCCAAAGAGGCCACTGTGATGTGCGAGCAATGTGATGTGTTCTACTGTGACCCTTGTCGCTTGAGGTGCCACCCTCCCCGAGGTCCGCTAGCCAAGCATCGCCTTGTACCCCCGGCACAGGGCAGTATAAGCCGTCGGACAAGTCCCCGAAAGATCTCCACCTGTACAGAGCACGAACTGGAGAACCTGAGCATGTACTGTGTTCAGTGCAAGATGCCGGTGTGTTACCAGTGTTTAGAGGAAGGGAAACATGGGACACACGAAGTCAAGGCTCTAGGAGCTATGTGGAAACTGCACAAGggCCAGCTGTCCCAGGCCCTCAACATCCTGTCGGACCGAGCTACCGAGGCCAAGGAGTTCCTGGTtcagctgaggaacatggtgcaGCACATCCAGCCCACTGATGGTCCAGGGAGACCCTTACTCGTGACTTCAGGGTGGGGAACGCtgaagGAGAACGGCGTGGAGTTCGAAGCCTGTCTGGTGGCGCAGTGTGACGCCCTCATTGACGCCCTGAACCGACGCAAGGCCCAGCTGCTGACCCGCGTCAACAACGAACATGAGCACAAGCTGAAGgtggtgagggatcAGATATCTCACTGTACGGTGAAGCTGCGTCAGACGACAGGCCTGATGGAGTATTGTCTAGAGGTCATCAAAGAGAACGACCCCAGCGGATTCCTACAGATCTCAGACGCCCTGATCAGGAGGGTGCACATGACGGAGGGTCAGTGGGGGAAGGGAACCCTGACCCCCAGGATGACCAGTGACTTTGACTTGACCCTGGACAGCGGACCCCTGTTACAGACCATCCACCAACTGGACTTCATACAGATgaaagTTCCGTCTGCCCCCATGCTCCAGCTGGAGGAATGCTGCACCATCAACAACAGCGCCACGTTGTCATGGAAACAACCACCTCTCTCCACCATCGCCGTGGACGGATACATCCTGGAGCTGGACGATGGCAACGGGGGACAGTTTAGGGAAGTGTACGTGGGGACGGAGACGATCTGCACGGTGGATGGACTCCACTACAACAGCACCTACATGTCCAGGGTCAAAGCCTTCAACGCCAGCGGAGTGGGACAGTACAGCAAGACGCTGGCCATGCAGACCTCCGAGACTGGACAATCCCCTTGTGATATGCAAACGCTAGCCACAGTTGCCTGGTTCACCTTTGACCCCGCGTCGGCCCACCCTGACATCATCCTCTCCAACGACAACCTGACGGTGACGTGCAACAGCTACGACGACAGGGTGGTCATGGGTAATTCCGGCTTCTCCCGCGGTGTGCACTACTGGGAGATCACGGTGGATCGCTATGACAACCACCCGGACCCTGCGTTCGGGGTTGCCCGCGGCGACGTGCTGAAGGACGTGATGCTGGGGAAAGACGACAAGGCCTGGGCCATGTACGTGGACAACAACCGCTCCTGGTTCATGCACAACAACTCACACACCAACAGGACGGACGGGGGCGTCAGTGAAGAGGCTACAGTAGGAGTGTTGTTAGACTTCACCAGAGGGGTGCTCATCTTCCTCATCAACGACGAACAGCAGGGTCCTGTGGCCTTCGAAGGCATCGAGGGGATCTACTACCCTGCTGTCAGCCTCAACCGCAATGTACAGGTGACCCTGCACACCGGCCTGCCCATTCCTGACTTCTACACACCAGGGGAAGCAGACCTGTCTGGCTCAGTGTGTTAAGGAGTTGACTCAGCACTGCAGTGAAGCAAGACAATgtcggtgtcccaaatggcaccctattccctatatagtgcactacattagaccagagccctattccctatatagtgcactacattagaccagagccctattccctacatagtgcacta
>XM_036955299.1
CTTACTTCCAAGGATGCATTTGCGGTGGTAGATGCTGAAAGATAAGTCCGCTGTCTGTGCGCAATAGCATTTTGAGTTATCACATATAGCTAATTTTCTGGAATTGAGAGAAACTATTTCACTCCGAAgagaatttaaaatggatgagaTGGAGGAAGAATTAAAATGCCCTGTCTGCGGATCGTTTTTCCGGGAGCCGATCATTCTACCGTGCTCCCACAACATCTGCCTGGCTTGCGCTCGGAATATCCTAGTGCAGACCCCGGACGCTGAATCTCCGCAGAGTAGCCGTGCTTCTGGCTCGGGAGTCTCCGACTATGATTACCTGGATCTCGATAAGATGAGCTTGTACAGCGAGGCGGACAGTGGATACGGTTCGTATGGTGGCTTCGTTAGTGCCCCGACCACCCCTTGCCAGAAATCCCCAAACGGGGTGCGTGTTTTCCCCCCTGCCGTCCCCCAACCCCCTTCTCAGCACCACTTGCTAGGACACCCAGGTTCCCTACCTCCAATCCCACGCAACTCCTGCCTCACATGCCCGCAGTGTCATCGCAGCCTCATCTTGGACGAGAGGGGGCTCCGCGGGTTTGCCAAGAACAGGGTGCTGGAAGGGGTCGTGGACCGGTACCAGCAGAGCAAAACAGCCGCTCTCAAGTGTCAGCTCTGCGAGAAGAGTCCCAAAGAGGCCACTGTGATGTGCGAGCAATGTGATGTGTTCTACTGTGACCCTTGTCGCTTGAGGTGCCACCCTCCCCGAGGTCCGCTAGCCAAGCATCGCCTTGTACCCCCGGCACAGGGCAGTATAAGCCGTCGGACAAGTCCCCGAAAGATCTCCACCTGTACAGAGCACGAACTGGAGAACCTGAGCATGTACTGTGTTCAGTGCAAGATGCCGGTGTGTTACCAGTGTTTAGAGGAAGGGAAACATGGGACACACGAAGTCAAGGCTCTAGGAGCTATGTGGAAACTGCACAAGggCCAGCTGTCCCAGGCCCTCAACATCCTGTCGGACCGAGCTACCGAGGCCAAGGAGTTCCTGGTtcagctgaggaacatggtgcaGCACATCCAGCCCACTGATGGTCCAGGGAGACCCTTACTCGTGACTTCAGGGTGGGGAACGCtgaagGAGAACGGCGTGGAGTTCGAAGCCTGTCTGGTGGCGCAGTGTGACGCCCTCATTGACGCCCTGAACCGACGCAAGGCCCAGCTGCTGACCCGCGTCAACAACGAACATGAGCACAAGCTGAAGgtggtgagggatcAGATATCTCACTGTACGGTGAAGCTGCGTCAGACGACAGGCCTGATGGAGTATTGTCTAGAGGTCATCAAAGAGAACGACCCCAGCGGATTCCTACAGATCTCAGACGCCCTGATCAGGAGGGTGCACATGACGGAGGGTCAGTGGGGGAAGGGAACCCTGACCCCCAGGATGACCAGTGACTTTGACTTGACCCTGGACAGCGGACCCCTGTTACAGACCATCCACCAACTGGACTTCATACAGATgaaagTTCCGTCTGCCCCCATGCTCCAGCTGGAGGAATGCTGCACCATCAACAACAGCGCCACGTTGTCATGGAAACAACCACCTCTCTCCACCATCGCCGTGGACGGATACATCCTGGAGCTGGACGATGGCAACGGGGGACAGTTTAGGGAAGTGTACGTGGGGACGGAGACGATCTGCACGGTGGATGGACTCCACTACAACAGCACCTACATGTCCAGGGTCAAAGCCTTCAACGCCAGCGGAGTGGGACAGTACAGCAAGACGCTGGCCATGCAGACCTCCGAGATTGCCTGGTTCACCTTTGACCCCGCGTCGGCCCACCCTGACATCATCCTCTCCAACGACAACCTGACGGTGACGTGCAACAGCTACGACGACAGGGTGGTCATGGGTAATTCCGGCTTCTCCCGCGGTGTGCACTACTGGGAGATCACGGTGGATCGCTATGACAACCACCCGGACCCTGCGTTCGGGGTTGCCCGCGGCGACGTGCTGAAGGACGTGATGCTGGGGAAAGACGACAAGGCCTGGGCCATGTACGTGGACAACAACCGCTCCTGGTTCATGCACAACAACTCACACACCAACAGGACGGACGGGGGCGTCAGTGAAGAGGCTACAGTAGGAGTGTTGTTAGACTTCACCAGAGGGGTGCTCATCTTCCTCATCAACGACGAACAGCAGGGTCCTGTGGCCTTCGAAGGCATCGAGGGGATCTACTACCCTGCTGTCAGCCTCAACCGCAATGTACAGGTGACCCTGCACACCGGCCTGCCCATTCCTGACTTCTACACACCAGGGGAAGCAGACCTGTCTGGCTCAGTGTGTTAAGGAGTTGACTCAGCACTGCAGTGAAGCAAGACAATgtcggtgtcccaaatggcaccctattccctatatagtgcactacattagaccagagccctattccctatatagtgcactacattagaccagagccctattccctacatagtgcacta
>XM_036955300.1
atggatgagaTGGAGGAAGAATTAAAATGCCCTGTCTGCGGATCGTTTTTCCGGGAGCCGATCATTCTACCGTGCTCCCACAACATCTGCCTGGCTTGCGCTCGGAATATCCTAGTGCAGACCCCGGACGCTGAATCTCCGCAGAGTAGCCGTGCTTCTGGCTCGGGAGTCTCCGACTATGATTACCTGGATCTCGATAAGATGAGCTTGTACAGCGAGGCGGACAGTGGATACGGTTCGTATGGTGGCTTCGTTAGTGCCCCGACCACCCCTTGCCAGAAATCCCCAAACGGGGTGCGTGTTTTCCCCCCTGCCGTCCCCCAACCCCCTTCTCAGCACCACTTGCTAGGACACCCAGGTTCCCTACCTCCAATCCCACGCAACTCCTGCCTCACATGCCCGCAGTGTCATCGCAGCCTCATCTTGGACGAGAGGGGGCTCCGCGGGTTTGCCAAGAACAGGGTGCTGGAAGGGGTCGTGGACCGGTACCAGCAGAGCAAAACAGCCGCTCTCAAGTGTCAGCTCTGCGAGAAGAGTCCCAAAGAGGCCACTGTGATGTGCGAGCAATGTGATGTGTTCTACTGTGACCCTTGTCGCTTGAGGTGCCACCCTCCCCGAGGTCCGCTAGCCAAGCATCGCCTTGTACCCCCGGCACAGGGCAGTATAAGCCGTCGGACAAGTCCCCGAAAGATCTCCACCTGTACAGAGCACGAACTGGAGAACCTGAGCATGTACTGTGTTCAGTGCAAGATGCCGGTGTGTTACCAGTGTTTAGAGGAAGGGAAACATGGGACACACGAAGTCAAGGCTCTAGGAGCTATGTGGAAACTGCACAAGggCCAGCTGTCCCAGGCCCTCAACATCCTGTCGGACCGAGCTACCGAGGCCAAGGAGTTCCTGGTtcagctgaggaacatggtgcaGCACATCCAGGAGAACGGCGTGGAGTTCGAAGCCTGTCTGGTGGCGCAGTGTGACGCCCTCATTGACGCCCTGAACCGACGCAAGGCCCAGCTGCTGACCCGCGTCAACAACGAACATGAGCACAAGCTGAAGgtggtgagggatcAGATATCTCACTGTACGGTGAAGCTGCGTCAGACGACAGGCCTGATGGAGTATTGTCTAGAGGTCATCAAAGAGAACGACCCCAGCGGATTCCTACAGATCTCAGACGCCCTGATCAGGAGGGTGCACATGACGGAGGGTCAGTGGGGGAAGGGAACCCTGACCCCCAGGATGACCAGTGACTTTGACTTGACCCTGGACAGCGGACCCCTGTTACAGACCATCCACCAACTGGACTTCATACAGATgaaagTTCCGTCTGCCCCCATGCTCCAGCTGGAGGAATGCTGCACCATCAACAACAGCGCCACGTTGTCATGGAAACAACCACCTCTCTCCACCATCGCCGTGGACGGATACATCCTGGAGCTGGACGATGGCAACGGGGGACAGTTTAGGGAAGTGTACGTGGGGACGGAGACGATCTGCACGGTGGATGGACTCCACTACAACAGCACCTACATGTCCAGGGTCAAAGCCTTCAACGCCAGCGGAGTGGGACAGTACAGCAAGACGCTGGCCATGCAGACCTCCGAGACTGGACAATCCCCTTGTGATATGCAAACGCTAGCCACAGTTGCCTGGTTCACCTTTGACCCCGCGTCGGCCCACCCTGACATCATCCTCTCCAACGACAACCTGACGGTGACGTGCAACAGCTACGACGACAGGGTGGTCATGGGTAATTCCGGCTTCTCCCGCGGTGTGCACTACTGGGAGATCACGGTGGATCGCTATGACAACCACCCGGACCCTGCGTTCGGGGTTGCCCGCGGCGACGTGCTGAAGGACGTGATGCTGGGGAAAGACGACAAGGCCTGGGCCATGTACGTGGACAACAACCGCTCCTGGTTCATGCACAACAACTCACACACCAACAGGACGGACGGGGGCGTCAGTGAAGAGGCTACAGTAGGAGTGTTGTTAGACTTCACCAGAGGGGTGCTCATCTTCCTCATCAACGACGAACAGCAGGGTCCTGTGGCCTTCGAAGGCATCGAGGGGATCTACTACCCTGCTGTCAGCCTCAACCGCAATGTACAGGTGACCCTGCACACCGGCCTGCCCATTCCTGACTTCTACACACCAGGGGAAGCAGACCTGTCTGGCTCAGTGTGTTAAGGAGTTGACTCAGCACTGCAGTGAAGCAAGACAATgtcggtgtcccaaatggcaccctattccctatatagtgcactacattagaccagagccctattccctatatagtgcactacattagaccagagccctattccctacatagtgcacta
>XM_036955301.1
atggatgagaTGGAGGAAGAATTAAAATGCCCTGTCTGCGGATCGTTTTTCCGGGAGCCGATCATTCTACCGTGCTCCCACAACATCTGCCTGGCTTGCGCTCGGAATATCCTAGTGCAGACCCCGGACGCTGAATCTCCGCAGAGTAGCCGTGCTTCTGGCTCGGGAGTCTCCGACTATGATTACCTGGATCTCGATAAGATGAGCTTGTACAGCGAGGCGGACAGTGGATACGGTTCGTATGGTGGCTTCGTTAGTGCCCCGACCACCCCTTGCCAGAAATCCCCAAACGGGGTGCGTGTTTTCCCCCCTGCCGTCCCCCAACCCCCTTCTCAGCACCACTTGCTAGGACACCCAGGTTCCCTACCTCCAATCCCACGCAACTCCTGCCTCACATGCCCGCAGTGTCATCGCAGCCTCATCTTGGACGAGAGGGGGCTCCGCGGGTTTGCCAAGAACAGGGTGCTGGAAGGGGTCGTGGACCGGTACCAGCAGAGCAAAACAGCCGCTCTCAAGTGTCAGCTCTGCGAGAAGAGTCCCAAAGAGGCCACTGTGATGTGCGAGCAATGTGATGTGTTCTACTGTGACCCTTGTCGCTTGAGGTGCCACCCTCCCCGAGGTCCGCTAGCCAAGCATCGCCTTGTACCCCCGGCACAGGGCAGTATAAGCCGTCGGACAAGTCCCCGAAAGATCTCCACCTGTACAGAGCACGAACTGGAGAACCTGAGCATGTACTGTGTTCAGTGCAAGATGCCGGTGTGTTACCAGTGTTTAGAGGAAGGGAAACATGGGACACACGAAGTCAAGGCTCTAGGAGCTATGTGGAAACTGCACAAGggCCAGCTGTCCCAGGCCCTCAACATCCTGTCGGACCGAGCTACCGAGGCCAAGGAGTTCCTGGTtcagctgaggaacatggtgcaGCACATCCAGGAGAACGGCGTGGAGTTCGAAGCCTGTCTGGTGGCGCAGTGTGACGCCCTCATTGACGCCCTGAACCGACGCAAGGCCCAGCTGCTGACCCGCGTCAACAACGAACATGAGCACAAGCTGAAGgtggtgagggatcAGATATCTCACTGTACGGTGAAGCTGCGTCAGACGACAGGCCTGATGGAGTATTGTCTAGAGGTCATCAAAGAGAACGACCCCAGCGGATTCCTACAGATCTCAGACGCCCTGATCAGGAGGGTGCACATGACGGAGGGTCAGTGGGGGAAGGGAACCCTGACCCCCAGGATGACCAGTGACTTTGACTTGACCCTGGACAGCGGACCCCTGTTACAGACCATCCACCAACTGGACTTCATACAGATgaaagTTCCGTCTGCCCCCATGCTCCAGCTGGAGGAATGCTGCACCATCAACAACAGCGCCACGTTGTCATGGAAACAACCACCTCTCTCCACCATCGCCGTGGACGGATACATCCTGGAGCTGGACGATGGCAACGGGGGACAGTTTAGGGAAGTGTACGTGGGGACGGAGACGATCTGCACGGTGGATGGACTCCACTACAACAGCACCTACATGTCCAGGGTCAAAGCCTTCAACGCCAGCGGAGTGGGACAGTACAGCAAGACGCTGGCCATGCAGACCTCCGAGATTGCCTGGTTCACCTTTGACCCCGCGTCGGCCCACCCTGACATCATCCTCTCCAACGACAACCTGACGGTGACGTGCAACAGCTACGACGACAGGGTGGTCATGGGTAATTCCGGCTTCTCCCGCGGTGTGCACTACTGGGAGATCACGGTGGATCGCTATGACAACCACCCGGACCCTGCGTTCGGGGTTGCCCGCGGCGACGTGCTGAAGGACGTGATGCTGGGGAAAGACGACAAGGCCTGGGCCATGTACGTGGACAACAACCGCTCCTGGTTCATGCACAACAACTCACACACCAACAGGACGGACGGGGGCGTCAGTGAAGAGGCTACAGTAGGAGTGTTGTTAGACTTCACCAGAGGGGTGCTCATCTTCCTCATCAACGACGAACAGCAGGGTCCTGTGGCCTTCGAAGGCATCGAGGGGATCTACTACCCTGCTGTCAGCCTCAACCGCAATGTACAGGTGACCCTGCACACCGGCCTGCCCATTCCTGACTTCTACACACCAGGGGAAGCAGACCTGTCTGGCTCAGTGTGTTAAGGAGTTGACTCAGCACTGCAGTGAAGCAAGACAATgtcggtgtcccaaatggcaccctattccctatatagtgcactacattagaccagagccctattccctatatagtgcactacattagaccagagccctattccctacatagtgcacta

Function

symbol description
trim9 Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in head. Orthologous to human TRIM9 (tripartite motif containing 9).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM9 isoform X4

GO: NA

KEGG:

id description
K10649 TRIM9_67; tripartite motif-containing protein 9/67

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955298.1 False 2538 mRNA 0.56 12 61746138 61852881
XM_036955299.1 False 2499 mRNA 0.56 11 61746138 61852881
XM_036955300.1 False 2342 mRNA 0.57 11 61746277 61852881
XM_036955301.1 True 2303 mRNA 0.57 10 61746277 61852881

Neighbor

gene id symbol gene type direction distance location
LOC110498259 LOC106603387 coding upstream 39995 61700705 ~ 61707803 (+)
LOC118941510 LOC106603467 coding upstream 316681 61407641 ~ 61430060 (+)
LOC118941509 LOC106603467 coding upstream 344874 61392572 ~ 61401264 (+)
LOC118941508 LOC106603467 coding upstream 363792 61362432 ~ 61382346 (+)
LOC110498404 LOC105025554 coding upstream 441007 61242422 ~ 61308910 (+)
pygl LOC106611459 coding downstream 10756 61863637 ~ 61899051 (+)
LOC118941521 NA coding downstream 28449 61881330 ~ 61882333 (+)
nin LOC106611458 coding downstream 71445 61924326 ~ 62009301 (+)
sav1 sav1 coding downstream 167713 62020594 ~ 62038893 (+)
map4k5 LOC106611444 coding downstream 242560 62095441 ~ 62210453 (+)
G1646335 NA non-coding upstream 1136 61742083 ~ 61745002 (+)
G1646332 NA non-coding upstream 7610 61738291 ~ 61738528 (+)
G1646326 NA non-coding upstream 15977 61729877 ~ 61730161 (+)
G1646322 NA non-coding upstream 25058 61715514 ~ 61721080 (+)
G1646320 NA non-coding upstream 34289 61711617 ~ 61711849 (+)
G1646388 NA non-coding downstream 30505 61883386 ~ 61884027 (+)
G1646390 NA non-coding downstream 41066 61893947 ~ 61894367 (+)
G1646394 LOC106603106 non-coding downstream 61780 61914661 ~ 61915497 (+)
G1646294 NA other upstream 185054 61558041 ~ 61561084 (+)
G1646225 NA other upstream 400984 61344787 ~ 61345154 (+)
G1646089 NA other upstream 542786 61200860 ~ 61203352 (+)
G1645444 NA other upstream 1007181 60718758 ~ 60738957 (+)
G1646509 NA other downstream 291302 62144183 ~ 62145290 (+)
srsf5a LOC106611464 other downstream 634120 62486921 ~ 62493719 (+)
G1647342 NA other downstream 1164074 63016955 ~ 63018688 (+)
G1647411 NA other downstream 1222268 63075149 ~ 63077143 (+)
G1647477 NA other downstream 1349875 63202756 ~ 63204057 (+)

Expression


Co-expression Network