G1646335


Basic Information

Item Value
gene id G1646335
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61742083 ~ 61745002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1883581
gtggttatagcattgggccagtaaccagcaggtagtctagtggttagagcgttggactagtaaccagcaggcagcctagtggttagagcgttgggccagtaaccagcaggcagcctagtggttagagcgttgggccagtaaccagcaggtagacaagtggttagagcattgggccagtaaccagcaggtagcctagtggttaggggcgttgggccagtaaccagcaggtagcctagttgttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcagg
>TU1883583
agcgttgggccagtaaccagcaggtagcctagtggttagagcgctgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttggagtgttgggcgagtaaccagcaggtagcctggtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagaaggtatcctagtggttagagtgttgggccattaaccagcaggcagcctagtggttagagcgttggactagtaaccagcaggtagcctagtggttagagcgttggactagtaaccagcaggcagcctagt
>TU1883584
agcgttgggccagtaaccagcaggtagcctagtggttagagcgctgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttggagtgttgggcgagtaaccagcaggtagcctggtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagaaggtatcctagtggttagagtgttgggccattaaccagcaggcagcctagtggttagagcgttggactagtaaccagcaggtagcctagtggttagagcgttggactagtaaccagcaggtagcctagtggttagagcgttggactagtaaccagcaggtagcctagttgttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttggactagtaaccagcaggtagcctagtgtttacagcgttgggccagtaaccagcaggtagcct
>TU1883580
tagtggttagagtgttgggccattaaccagcaggtagcctagtggttagagcgttggactagtaaccagcaggtagcctagttgttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttggactagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcagg

Function

NR:

description
membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1883581 False 423 lncRNA 0.55 3 61742083 61745002
TU1883583 False 345 lncRNA 0.55 2 61742755 61743411
TU1883584 False 576 lncRNA 0.55 3 61742755 61744189
TU1883580 True 346 lncRNA 0.54 3 61743291 61745002

Neighbor

gene id symbol gene type direction distance location
LOC110498259 LOC106603387 coding upstream 35940 61700705 ~ 61707803 (+)
LOC118941510 LOC106603467 coding upstream 312626 61407641 ~ 61430060 (+)
LOC118941509 LOC106603467 coding upstream 340819 61392572 ~ 61401264 (+)
LOC118941508 LOC106603467 coding upstream 359737 61362432 ~ 61382346 (+)
LOC110498404 LOC105025554 coding upstream 436952 61242422 ~ 61308910 (+)
trim9 trim9 coding downstream 1136 61746138 ~ 61852881 (+)
pygl LOC106611459 coding downstream 118635 61863637 ~ 61899051 (+)
LOC118941521 NA coding downstream 136328 61881330 ~ 61882333 (+)
nin LOC106611458 coding downstream 179324 61924326 ~ 62009301 (+)
sav1 sav1 coding downstream 275592 62020594 ~ 62038893 (+)
G1646332 NA non-coding upstream 3555 61738291 ~ 61738528 (+)
G1646326 NA non-coding upstream 11922 61729877 ~ 61730161 (+)
G1646322 NA non-coding upstream 21003 61715514 ~ 61721080 (+)
G1646320 NA non-coding upstream 30234 61711617 ~ 61711849 (+)
G1646318 NA non-coding upstream 30900 61710958 ~ 61711183 (+)
G1646345 NA non-coding downstream 10873 61755875 ~ 61760275 (+)
G1646361 NA non-coding downstream 50812 61795814 ~ 61796064 (+)
G1646379 NA non-coding downstream 84988 61829990 ~ 61835913 (+)
G1646381 NA non-coding downstream 94915 61839917 ~ 61841322 (+)
G1646388 NA non-coding downstream 138384 61883386 ~ 61884027 (+)
G1646294 NA other upstream 180999 61558041 ~ 61561084 (+)
G1646225 NA other upstream 396929 61344787 ~ 61345154 (+)
G1646089 NA other upstream 538731 61200860 ~ 61203352 (+)
G1645444 NA other upstream 1003126 60718758 ~ 60738957 (+)
G1646509 NA other downstream 399181 62144183 ~ 62145290 (+)
srsf5a LOC106611464 other downstream 741999 62486921 ~ 62493719 (+)
G1647342 NA other downstream 1271953 63016955 ~ 63018688 (+)
G1647411 NA other downstream 1330147 63075149 ~ 63077143 (+)
G1647477 NA other downstream 1457754 63202756 ~ 63204057 (+)

Expression


Co-expression Network