RNA id: TU1883581


Basic Information

Item Value
RNA id TU1883581
length 423
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G1646335
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61742083 ~ 61745002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggttatagcattgggccagtaaccagcaggtagtctagtggttagagcgttggactagtaaccagcaggcagcctagtggttagagcgttgggccagtaaccagcaggcagcctagtggttagagcgttgggccagtaaccagcaggtagacaagtggttagagcattgggccagtaaccagcaggtagcctagtggttaggggcgttgggccagtaaccagcaggtagcctagttgttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgtgccagtaaccagcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883576 lncRNA upstream 3555 61738291 ~ 61738528 (+) True G1646332
TU1883570 lncRNA upstream 11922 61729877 ~ 61730161 (+) True G1646326
TU1883564 lncRNA upstream 21003 61715514 ~ 61721080 (+) False G1646322
TU1883566 lncRNA upstream 21003 61720196 ~ 61721080 (+) True G1646322
TU1883562 lncRNA upstream 30234 61711617 ~ 61711849 (+) True G1646320
TU1883626 lncRNA downstream 10873 61755875 ~ 61759887 (+) False G1646345
TU1883627 lncRNA downstream 10873 61755875 ~ 61757656 (+) False G1646345
TU1883629 lncRNA downstream 10873 61755875 ~ 61760275 (+) True G1646345
TU1883647 lncRNA downstream 50812 61795814 ~ 61796064 (+) True G1646361
TU1883669 lncRNA downstream 84988 61829990 ~ 61834510 (+) False G1646379
XM_036955297.1 mRNA upstream 35940 61700705 ~ 61706143 (+) False LOC110498259
XM_036955279.1 mRNA upstream 312626 61421677 ~ 61429457 (+) False LOC118941510
XM_036955280.1 mRNA upstream 312626 61421677 ~ 61429457 (+) False LOC118941510
XM_036955281.1 mRNA upstream 327028 61407642 ~ 61415055 (+) False LOC118941510
XM_036955298.1 mRNA downstream 1136 61746138 ~ 61852881 (+) False trim9
XM_036955299.1 mRNA downstream 1136 61746138 ~ 61852881 (+) False trim9
XM_036955300.1 mRNA downstream 1275 61746277 ~ 61852881 (+) False trim9
XM_036955301.1 mRNA downstream 1275 61746277 ~ 61852881 (+) True trim9
XM_036955307.1 mRNA downstream 118635 61863637 ~ 61898665 (+) False pygl
TU1883513 other upstream 180999 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 396929 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 450242 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 538731 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1003126 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 399181 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 741999 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 1271953 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1330147 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1457754 63202756 ~ 63204057 (+) False G1647477

Expression Profile