RNA id: XM_036955307.1


Basic Information

Item Value
RNA id XM_036955307.1
length 5333
RNA type mRNA
GC content 0.46
exon number 20
gene id pygl
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61863637 ~ 61899051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACCAATGTACattagagaggatagagaggaggagacggATGCCACAGAAATGCTAGGACCTATACTTCACTTCGCCACTTCATGGTTATTAAAGTTGAAGACGGACAGCAGCAGTTTTGTTCAGCAGCATGGCGTCGCCTCTAACTGACCTGGAGAAGCGTAAACAGATCAGTATCAGGGGAATAGTCGGTGTCGAGAACGTCGCCGAGTTGAAGAAAGGTTTTAACCGACATCTCCACTTCACTTTGGTCAAAGACCGGAACGTAGCGACGCCGCGGGATTATTACTTCGCCCTCGCGCACACGGTTCGAGATCACCTGGTGGGAAGATGGATCAGAACGCAACAGTTTTACTATGAGACCGATCCCAAGCGGGTGTACTACCTCTCCCTGGAGTTCTACATGGGCAGAACCCTCCAGAACACCATGATTAACCTGGGGCTGCAGAACGCCTGTGACGAGGCCATCTACCAGCTGGGTTTGGACATGGAGGatctggaggagatggaggaggatgcAGGGCTGGGGAACGGAGGCCTAGGCAGACTGGCAGcatGTTTCCTGGACTCGATGGCCACCCTGGGTCTGGCAGCGTACGGTTACGGCATCCGTTATGAATATGGGATCTTCAATCAGAAGATCAAGGAAGGTTGGCAGGTGGAAGAGGCAGATGATTGGCTGCGTCATGGTAACCCCTGGGAGAAGGCCCGCCCTGAGTACATGCTACCTGTGCACTTCTACGGCAGAGTGGAGGAGTCTAAGGAAGGGGCCAGATGGGTGGATACGCAGgtgGTCCTGGCCATGCCCTATGACACGCCCATCCCTGGATATATgaacaacacagtcaacaccatgaGGCTGTGGTCAGCCAGAGCTCCCAACGACTTCAACCTGAAGGACTTCAATGTTGGAGATTACATCCAAGCTGTTCTGGACAGGAATCTGGCGGAGAATATTTCTCGTGTCCTCTACCCCAACGATAACTTCTTTGAGGGGAAGGAGCTACGCCTGAAGCAGGAGTACTTTGTGGTGGCGGCCACACTTCAGGACATCATCCGACGCTTCAAGATATCCAAGAAGGGCTCCACCGGTCCAGTGTCTTTCGACAGCTTCCCAGAGAAGGTGGCCATCCAGTTGAATGACACTCATCCTGCGATGGCCATCCCAGAGCTCATGAGGGTCTTTGTGGACGTCGAGAAACTCGACTGGGACACGgcGTGGGCCATCACCAAGCGGACCTTTGCGTACACCAATCACACGGTGCTTCCCGAGGCTCTGGAGCGCTGGCCCGTTGGCCTGCTGGAGACCCTGCTGCCCAGACACCTCCAGATCATCTACAGGATCAATCAGGGACACCTGGACGGGATTAGAGCTCTCTTTCCAGGAGACCTGGAAAGGATACGCAGGATGTCTCTGATCGAGGAAGACGGGGGCAAGAGGGTCAACATGGCCCACCTGTGCATCGTGGGATCTCACGCCGTCAACGGAGTCGCAGAGATACACTCCAACATCATCAAGAATGACGTGTTCCGAGACTTCAGCGAATTAGAACCGGATAAATTCCAGAACAAGACCAATGGCATCACTCCTAGGCGCTGGCTCCTCCTCTGTAACCCGGGATTGGCTGAGCTTATCGCTGAGGCCATTGGGGAGGAATATGTGAAAGACCTCAGTCAGTTACAGAAGCTCAATGAGCTGGTCAATGATGATGCCTTCATTAGAGATGTGTCTAAAGTCAAGCAGGACAACAAGGTGAAGTTTTCACAGTACCTGGAGAAAGAGTACAAGGTGAACATCAACCTGTCCTCCATGTTTGACGTCCACGTCAAGAGGATTCACGAGTACAAGCGCCAGCTCCTCAACTGCCTTCACATTATCACCATGTACAACCgCATCAAGAAGAACCCAAAAGCACTTTTTGTTCCCCGGACTGTGATCATTGGTGGCAAGGCTGCCCCAGGGTATCACatggccaagaagatcatcaagctGATCACGGCCGTCGGACATGTGGTCAACAAAGACCCAGTGGTGGGAAGCAAACTGAAGGTCATCTACCTGGAGAACTACAGAGTCTCCCTGGCTGAGAAAGTCATCCCAGCCACAGACCTGTCTGAGCAGATCTCCACAGCTGGCACGGAGGCGTCTGGCACTGGCAACATGAAGTTCATGCTGAACGGAGCGCTCACCATCGGCACCATGGACGGAGCCAACGTAGAGATGGCCGAGGAGGCTGGAGAGGAGAACATGTTCATCTTCGGCATGAGGGTGGAGGACGTGGCAGAGATGGACGTACAGGGCTACGATGCCATGACATATTACAACAACATCCCAGAACTGAAGCAGGCCGTTGACCAGATTCAGGGAGGATTCTTCAGCCCCAAACAACCAGAGCTCTTCAAAGACGTCACCAACATGCTCTTCAACCACGACCGCTTCAAGGTGTTTGCAGACTATGAGGGTTACATAAAGTGCCAGGAGAAAGTCAGCCAACTATATCAGAATCCTAAGGAGTGGACGCAGATGGCGATCAAGAATATCGCTGCTTCCGGAAAGTTCTCTAGCGACCGCACCATCACCGACTACGCCACGGAGGTGTGGGGGGTGGAGCCTACTGATCTGAAGATCCCACCCCCCAACGAGCCCCGCAAGGCCTTGGAGGAGACCGCCAGGGTGCTGACGGAGAAGTGAGGCTGCCTGGTGTGGTGTAGGGTGACAttgcccctagacgctgatcttgggtcagttttttTTCTAATGGTTGAGGGGAAGTGGATTCTAGATTTGTATCTAGGGAAACGTCACCCAGAAGCGCCTCGTGTTCTTTTTAAAGGGACAATCTGGGATTCAGACAACAACAAAGCAGTCACCACGCTacttttggtaaacagctgagggatagCCACTCCCAAATGTATAAACGCAGCTATGGAGGCAAGTCCATCTGTGAGATTGAAATGTTTTAACCATGTATTGAAATGAGtcaaatcccagattgcccctttagcTCAATAAACTGAGTTTTGTTTGTAAAACACCTTAACTGATGCAAATTAACAGTCTGCTACATACCCTCAGAATAAACAAACAACAGTCTGCTACATACCCTCAGAATCCACAAACAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAACAGTCTGCTACATACCCTCAGAATCCACAAACAACAGTCTGCTACATACCCTCAGAATAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAACAGTCTGCTACATACCCTCAGAATAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACAAACCCTCAGAATAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAACAGTCTGCTACATACCCTCAGAATCCACAAACAACAGTCTGCTACATACCCTCAGAATAAACAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGTATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAACAGTCTGCTACATACCTTCAGACTAAACAAACAGTCTGCTACATACCTTCAGAATAAACAACAGTCTGCTACATACCTTCAGAATAAATAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAACAGTCTGCTACATACCTTTAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATCCACAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAACAGTCTGCTACATACCCTCAGAATCCACAAACAACAGTCTGCTACATACCCTCAGAATCCACAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATCCACAAACAACAGTCTGCTACATACCCTCAGAATCCACAAACAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATCCACAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAACAGTCTGCTACATACCTTCAGAATCCACAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAACAGTCTGCTACATATCTTCAGAATAAACAAACAACAGTCTGCTACATACCTTCAGAATCCACAAACAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATCCACAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAAACAGTCTGCTACATACCCTCAGAATAAACAACAGTCTGCTACATACCCTCAGAATAAACAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883680 lncRNA upstream 22315 61839917 ~ 61841322 (+) True G1646381
TU1883667 lncRNA upstream 27724 61832226 ~ 61835913 (+) False G1646379
TU1883669 lncRNA upstream 29127 61829990 ~ 61834510 (+) False G1646379
TU1883676 lncRNA upstream 29127 61832226 ~ 61834510 (+) True G1646379
TU1883677 lncRNA upstream 31926 61829990 ~ 61831711 (+) False G1646379
TU1883696 lncRNA downstream 15996 61914661 ~ 61915497 (+) True G1646394
TU1883593 lncRNA downstream 37852 61936517 ~ 62005651 (+) True nin
TU1883715 lncRNA downstream 63986 61962651 ~ 62023734 (+) True G1646412
TU1883718 lncRNA downstream 66100 61964765 ~ 61965487 (+) True G1646414
TU1883792 lncRNA downstream 141680 62040345 ~ 62042161 (+) True G1646475
XM_036955298.1 mRNA upstream 10756 61746138 ~ 61852881 (+) False trim9
XM_036955299.1 mRNA upstream 10756 61746138 ~ 61852881 (+) False trim9
XM_036955300.1 mRNA upstream 10756 61746277 ~ 61852881 (+) False trim9
XM_036955301.1 mRNA upstream 10756 61746277 ~ 61852881 (+) True trim9
XM_036955297.1 mRNA upstream 157494 61700705 ~ 61706143 (+) False LOC110498259
XM_036955305.1 mRNA downstream 25661 61924326 ~ 62005651 (+) False nin
XM_036955304.1 mRNA downstream 25661 61924326 ~ 62009301 (+) False nin
XM_036955302.1 mRNA downstream 25662 61924327 ~ 62009301 (+) False nin
XM_036955303.1 mRNA downstream 25662 61924327 ~ 62009301 (+) False nin
XM_036955306.1 mRNA downstream 25664 61924329 ~ 62009301 (+) False nin
TU1883513 other upstream 302553 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 518483 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 571796 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 660285 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1124680 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 245518 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 588336 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 1118290 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1176484 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1304091 63202756 ~ 63204057 (+) False G1647477

Expression Profile