RNA id: TU1883680


Basic Information

Item Value
RNA id TU1883680
length 1328
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1646381
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61839917 ~ 61841322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGTTTCATTTGAATGCCAGACGACCAGGGTTCATTTGAATGCCAGATGACCTGGTTTCATTTGAATGCCAGACGACCAGGTTTCATTTGAATGCCAGACGACCAGGTTTCATTTGAATGCCAGACGACCAGGTTTCATTTGAATGCCAGATGACCAGGTTTCATTTGAATGCCAGACGACCAGGTTTAATTTGAATGCCAGACGACCAGGGTTCATTTGAATGCCAGACGACCAGGTTTCATTTGAATGCCAGATGACCAGGTTTCATTTGAATGCCAGACGACCAGGTTTCATTTGAATGCCAGACGACCAGGTTTCATTTGAATGCCAGACAACCAGGATTCATGTTGCCTTTGCTCCCCATCTGAAAAATAATCTGGGGGAAAGAATGCTATAATCTGTATCTCTTGTCATTGGATTGGAAAATAATTTGGGTGAAGGACTGCTATAATCTGTAGCTCTTGTCATTGGATTGGAAAATTATTTGGGTGAAGGACTGCTATAATCTGTAGCTCTTGTCATTGGATTGGAAAATAATTTGGGTGAAGGACTGCTATAATCTATGTAGCTTTTGTTGTTGGTTTTGGAAAATAATCTGGTGGAAAGACTGCTATAATCTACAGGATGTAGCTCTTTGTCACATggaatgacgctggagagacgaagcaggtacgggaaGTAACATTTAATAAAGAACGGACATGTAACGAGAACAGGAACAGAGTCAgaaaacaaagacagaaaacaatcaatgcagcagcagggaactgacaaatataggagaGGAAAATAGTGAGTCCAATAACACTGATGCGAGTGACGGCAGGTGTGGGTGATGGATGGCGTGATGCAGGGTAATCTGGCgcccctttttaaaaatgtatttaaccttcatttaaccagttaagaacaaattcttatttacaatgacagcctaggaacagtgggttaactgcctgttcagggtgcagaacgacagatttgtaccttgtcagctcggggatttaaacttgcaacctttcggttactagtccaacgctttaaccactaggctaccctcaaGCGCCAGGTggagggaagagcgggagcagacgtgacagtcttGTGGTTGGTTTGGAAAATAATCCCTAGAATGGGTGGAATATGCTTAGATCTTCTTTTGTGATATTAAACTGGCCACTGAAAAGAACCAGCTTCCCTGATCAACTCAACACGGCttttacccttctctctccttaCTTCTTCTCTTCCACCCTCTATCTTCAACTCACACACACTGCTcttccactgctctctctctcgctccctccctctctctccctcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883667 lncRNA upstream 4004 61832226 ~ 61835913 (+) False G1646379
TU1883669 lncRNA upstream 5407 61829990 ~ 61834510 (+) False G1646379
TU1883676 lncRNA upstream 5407 61832226 ~ 61834510 (+) True G1646379
TU1883677 lncRNA upstream 8206 61829990 ~ 61831711 (+) False G1646379
TU1883647 lncRNA upstream 43853 61795814 ~ 61796064 (+) True G1646361
TU1883687 lncRNA downstream 42064 61883386 ~ 61884027 (+) True G1646388
TU1883689 lncRNA downstream 52625 61893947 ~ 61894367 (+) True G1646390
TU1883609 lncRNA downstream 56975 61898297 ~ 61899051 (+) False pygl
TU1883611 lncRNA downstream 56975 61898297 ~ 61899051 (+) True pygl
TU1883696 lncRNA downstream 73339 61914661 ~ 61915497 (+) True G1646394
XM_036955297.1 mRNA upstream 133774 61700705 ~ 61706143 (+) False LOC110498259
XM_036955279.1 mRNA upstream 410460 61421677 ~ 61429457 (+) False LOC118941510
XM_036955280.1 mRNA upstream 410460 61421677 ~ 61429457 (+) False LOC118941510
XM_036955281.1 mRNA upstream 424862 61407642 ~ 61415055 (+) False LOC118941510
XM_036955307.1 mRNA downstream 22315 61863637 ~ 61898665 (+) False pygl
XR_005037827.1 mRNA downstream 40008 61881330 ~ 61882333 (+) False LOC118941521
XR_005037828.1 mRNA downstream 40008 61881330 ~ 61882333 (+) True LOC118941521
XM_036955305.1 mRNA downstream 83004 61924326 ~ 62005651 (+) False nin
XM_036955304.1 mRNA downstream 83004 61924326 ~ 62009301 (+) False nin
TU1883513 other upstream 278833 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 494763 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 548076 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 636565 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1100960 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 302861 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 645679 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 1175633 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1233827 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1361434 63202756 ~ 63204057 (+) False G1647477

Expression Profile