RNA id: TU1883611


Basic Information

Item Value
RNA id TU1883611
length 475
lncRNA type sense_over
GC content 0.38
exon number 2
gene id pygl
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61863637 ~ 61899051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATACCTTCAGAATCCACAAACAACAGTCTGCTACATACCTTCAGAATAAACAAACAGTCTGCTACATATCTTCAGAATAAACAAACAGTCTGCTACATATCTTCAGAATAAACAAACCAAATTATCAAATTTTCCTCAGCATTTCTGAATCCACCTTCTAAATACAAGGTCAAATGGCAGCCTGtccactatatagtgcactactgttgaccggACTGCTATTGGCcttggtcgaaagtagtgcactgtaaagtgaacaggggtgccatttggggaaaCTGCCCGTTAGCCAGCTACCAGTGAGTGGTCCATTCTTAGCAAAACTGTCTCATACTATATAGCGAGAGTTGAATATTTTCCATTATTAATGACccttgttttttttccccaaTGTTCTGTGTTGCatcaaaataaatatatttgtgtTTGA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883689 lncRNA upstream 3930 61893947 ~ 61894367 (+) True G1646390
TU1883687 lncRNA upstream 14270 61883386 ~ 61884027 (+) True G1646388
TU1883680 lncRNA upstream 56975 61839917 ~ 61841322 (+) True G1646381
TU1883667 lncRNA upstream 62384 61832226 ~ 61835913 (+) False G1646379
TU1883696 lncRNA downstream 15610 61914661 ~ 61915497 (+) True G1646394
TU1883593 lncRNA downstream 37466 61936517 ~ 62005651 (+) True nin
TU1883715 lncRNA downstream 63600 61962651 ~ 62023734 (+) True G1646412
TU1883718 lncRNA downstream 65714 61964765 ~ 61965487 (+) True G1646414
TU1883792 lncRNA downstream 141294 62040345 ~ 62042161 (+) True G1646475
XR_005037827.1 mRNA upstream 15964 61881330 ~ 61882333 (+) False LOC118941521
XR_005037828.1 mRNA upstream 15964 61881330 ~ 61882333 (+) True LOC118941521
XM_036955298.1 mRNA upstream 45416 61746138 ~ 61852881 (+) False trim9
XM_036955305.1 mRNA downstream 25275 61924326 ~ 62005651 (+) False nin
XM_036955304.1 mRNA downstream 25275 61924326 ~ 62009301 (+) False nin
XM_036955302.1 mRNA downstream 25276 61924327 ~ 62009301 (+) False nin
XM_036955303.1 mRNA downstream 25276 61924327 ~ 62009301 (+) False nin
XM_036955306.1 mRNA downstream 25278 61924329 ~ 62009301 (+) False nin
TU1883513 other upstream 337213 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 553143 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 606456 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 694945 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1159340 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 245132 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 587950 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 1117904 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1176098 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1303705 63202756 ~ 63204057 (+) False G1647477