G1646475


Basic Information

Item Value
gene id G1646475
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62040345 ~ 62042161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1883792
AGCTCCAACCCATCGGTTCAGGATGACATCACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGATGTTACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGGTGTTACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTACGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTACAGCTAGCACCAACCGATCGGTTCAGAATGACGTCACCCTTACGGCTAGCTCCAACCCATCGGTCCAGAATGATGTCACCGTAGGACTAGCTCCAACCCATCGGTTCAGAATGACGTCACCATAGGGCTAGCTCCAACCCATCGGTTCAGAATGATGTTACCGTAGGGCTAGCTCCAACCCATTGGTTCAGAATGATGTTACCGTACGGCTAGCTCCAACCCATCGGTTCAGAATGATGTCACCGTAGGGATAGCTCCAACCCATCGGTTCAGAATGTTAGCGTACGGCTAGCACCAACCCATCGGTTCAGAATGTTACCGTACGGCTAGCACCAACCCATCGGTTCAGAATGTTACCGTACGGCTAGCACCAACCCATCGGTTCAGAATGTTACCGTATGGCTAGCTCCAACCCATCGGTTCAGAATGTTACCGTACGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCCTTACGGCTAGCTCCAACCCATCGGTTCAGAATGTTACCATACGGCTAGCTCCAACCCATCGGTTCAGAATGTTACCGTACGGCTATCTCCAACCCATCGGTTCAGAATGACGTCACCCTTATGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTAGGACTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTACGGCTAGCACCAACCCATCGGTTCAGAATGTTACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGATGTTACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGATGTTACCGTAGGGCTAGCACCAACCCATCGGTTCAGAATGTTACCGTAGGGCTAGCACCAACCCATCGGTTCAGAATGTTACCGTAGGGCTAGCACCAACCCATTGGTTCAGAATGTTACCGTAGGGCTAGCACCAACCCATCGTTTCAGAATGTCACCGTACGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTACGGCTAGCACCAACCCATCGGTTCAGAATGTTACCGTACGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTACGGCTAGCACCAACCTATCGGTTCAGAATGTTAACGTACGGCTAGCTCCAACCCATTGGTTCAGAATGACGTCACCGTAGGGCTAGCACCAACCCATCGGTTCAGAATGTTAACGTACGGCTAGCTCCAACCCATCGGTTCAGAATGATGTTACCGTAGTGCTAGCTCCAACCCATCGGTTCAGAATGTTACCGTACGGCTAGCACCAACCTATCGGTTCAGAATGTTACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGATGTTACCATACGGCTAGCTCCAACCCATCGGTTCAGAATGTTACCGTACGGCTAGCTCCAACCCATCGGTTCAGAATGTCACCGTAGGGCTAGCTCCAACCCATCGGTTCAGAATGACGTCACCGTAGGGCTAGCACCAACCCATCGGTTCAGAATGATGTTACCGTACGGATGGTATTTAACCCTTTGTGCAGGGCAGATCCAACCCATCGGTTCAGAATGATGTTACCGTACGGCTGG

Function

NR:

description
extensin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1883792 True 1817 lncRNA 0.52 1 62040345 62042161

Neighbor

gene id symbol gene type direction distance location
sav1 sav1 coding upstream 1452 62020594 ~ 62038893 (+)
nin LOC106611458 coding upstream 31044 61924326 ~ 62009301 (+)
pygl LOC106611459 coding upstream 141680 61863637 ~ 61899051 (+)
LOC118941521 NA coding upstream 158012 61881330 ~ 61882333 (+)
trim9 trim9 coding upstream 187464 61746138 ~ 61852881 (+)
map4k5 LOC106611444 coding downstream 53280 62095441 ~ 62210453 (+)
cdkl1 cdkl1 coding downstream 174942 62217103 ~ 62244281 (+)
l2hgdh l2hgdh coding downstream 206566 62248727 ~ 62273364 (+)
sos2 sos2 coding downstream 233950 62276111 ~ 62379517 (+)
cdkn3 cdkn3 coding downstream 377195 62419356 ~ 62422349 (+)
G1646412 NA non-coding upstream 16611 61962651 ~ 62023734 (+)
G1646414 NA non-coding upstream 74858 61964765 ~ 61965487 (+)
G1646394 LOC106603106 non-coding upstream 124848 61914661 ~ 61915497 (+)
G1646476 NA non-coding downstream 698 62042859 ~ 62056596 (+)
G1646485 NA non-coding downstream 35096 62077257 ~ 62077714 (+)
G1646486 NA non-coding downstream 41023 62083184 ~ 62084341 (+)
G1646489 NA non-coding downstream 47001 62089162 ~ 62089482 (+)
G1646491 NA non-coding downstream 48186 62090347 ~ 62090561 (+)
G1646294 NA other upstream 479261 61558041 ~ 61561084 (+)
G1646225 NA other upstream 695191 61344787 ~ 61345154 (+)
LOC110498404 LOC105025554 other upstream 748504 61242422 ~ 61308910 (+)
G1646089 NA other upstream 836993 61200860 ~ 61203352 (+)
G1645444 NA other upstream 1301388 60718758 ~ 60738957 (+)
G1646509 NA other downstream 102022 62144183 ~ 62145290 (+)
srsf5a LOC106611464 other downstream 444840 62486921 ~ 62493719 (+)
G1647342 NA other downstream 974794 63016955 ~ 63018688 (+)
G1647411 NA other downstream 1032988 63075149 ~ 63077143 (+)
G1647477 NA other downstream 1160595 63202756 ~ 63204057 (+)

Expression


Co-expression Network