RNA id: XM_036955297.1


Basic Information

Item Value
RNA id XM_036955297.1
length 2694
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110498259
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61700705 ~ 61707803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTGACAACAGGCCTAGTCTGTCGAAGGAGAAAATGCGGAAATTGACATTGCGTTTGTTTTGGGGATCTTTATTTTTTTGGTGGGGGAAGGCGATGTCAAGGCATAAATAACACTACTCGTCAAACAATGAACAAAAaactttacaaaaaaaaataaatgtatgatTTCGCTTTAACTACCAAAACAAGGCTTCAGGTTTTGTGCATCACAGGAGAGATGGCGTCAGTGAAAGACAGCAGTCAAACACTCCTGCTCAATGTCATCACGAAAGATAAAGAGGAGGAAGTGAAGATTTGGGAATGTGACGATTACCCAGgagagagtccAGAGGCGCAGTCAGAAAAGATGGCCGACAGCAGTCAAACACTGGGGCTGAATGTCATCGTTaacagagaggagaaggaagacgTTGGTGAATCTGTTGATCCTGgagagacccCTAACTCCTCTGACCAAGTCGAGACATTTCCAGCTTCAGTGAAGCAACGTCGGAAAGTGACCAAAGTAAAGAAGCCTCACCGCTGTCCCCACTGTGAGAAGAGTTTCCCTTTCCTTTCATATCTTGAAAGACACGTGCGTAAACattctggagagaagccttattcctGTTCTGACTGTGGGATGAGTTTCTCCCAACTGAGTGGCTTGAACGTGCACCATCGAacgcacactggagagaagcctcaccgctgtcctcacTGTGAGGAGAGTTTCCCATTTCCATCATATCTTGAAAGACACGTGCGTAAACattctggagagaagccttattcctGTTCTGACTGTGGGATGAGTTTCTCCCAACTGAGTGGCTTGAACGTGCACCATCGAACGCATACTGGAGAGAAGCCTCACCACTGTCCTCACTGTGAGAAGAGTTTCCCATTCCCATCTTATCTTGAAATACACCTGCGGAAACATTCTGGAGAGAAACCGTACTCCTGCTCCGACTGTGggaaatgcttcacaacatcaagTCATCTAACCTCTCATCGGAGaactcacacaggggagaagccttactcctgctctgactgtgggaagagtttcccATTCCCATCATATCTTGAAAGACACCTGCGGAAACattctggagagaagccttactgctGCTCCGACTGCGGGAAATGCTTCACCACATCAAGCAATCTAACGCTACATCAGAgtgcacacaggggagaagccttggAGCCAATTTGAGTTCAAAAGAATTTACCCAAAAAGAAAAAGAACGGAAATGAAAAATATCATTGTGAAGTAATGCATGGTGAAActgaaatgtaaaaaacaaaaacaattctgtaaacaaaaaagtgaattgtatgaaaaaaaaaaatgtcgaATTCAAACACATTGAAAATGATTTTCAAAGCATTCAGTTGATGTTTGCATCCAATCTTTAAAGTTGATTTAGTCAAATAACTTGTTTTCGCTCTTGGATTTAGTCCTTGCAATGACAATTATATTCCACCTTCAAGTCATCTTTTCTCTCTTCCAAGTTTTGGTACTCTTGACCTGGAGGCAGGGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTCAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTCAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTCAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGAGTGTCCAATGTTAGAGGGGATGGGAGTGTCCAATGTTAGAGGGGATGGGAGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGAGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGTTAGAGGGGATGGGCGTGTCCAATGAGCCACAGCCTTGGAGTGGCAGcattcctccagtaccccccccaacAGGACACATTCTTattggacaagcacacctgattcaacttgtcaactaatcatcaagttctcaaattttatttttttactttaacctttatttaacaaggcaagtcagttttaagaacaaattcttattttcaatgacggcctaggaacgagtgggttaactgccttgttcaggggaagaacgacagatttttaccttgtcagctcgggggattcgatccagcaaccctTTCGGTTACTACTGGTCCtaacgatctaaccactaggctaccttgcctcAATGAGCTGAATGAGGTGTAGGGCTAGAACAAAAATGTGTAGTGTTggagaccagggttgggaaacaccgTCCTAACCAATAGGTTACTTGCACAATGTCGTAAAAACAACTTCCTGGTAATAAAGGTCATGGAAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883531 lncRNA upstream 41633 61658381 ~ 61659072 (+) True G1646303
TU1883501 lncRNA upstream 52620 61587827 ~ 61648085 (+) True G1646293
TU1883519 lncRNA upstream 90348 61595114 ~ 61610357 (+) True G1646296
TU1883437 lncRNA upstream 100742 61566374 ~ 61599963 (+) True G1646247
TU1883426 lncRNA upstream 102217 61503253 ~ 61598488 (+) True G1646236
TU1883538 lncRNA downstream 542 61706685 ~ 61707745 (+) False LOC110498259
TU1883542 lncRNA downstream 542 61706685 ~ 61707619 (+) False LOC110498259
TU1883545 lncRNA downstream 542 61706685 ~ 61707803 (+) False LOC110498259
TU1883540 lncRNA downstream 646 61706789 ~ 61707745 (+) False LOC110498259
TU1883539 lncRNA downstream 969 61707112 ~ 61707745 (+) False LOC110498259
XM_036955283.1 mRNA upstream 271248 61407641 ~ 61429457 (+) False LOC118941510
XM_036955279.1 mRNA upstream 271248 61421677 ~ 61429457 (+) False LOC118941510
XM_036955280.1 mRNA upstream 271248 61421677 ~ 61429457 (+) False LOC118941510
XM_036955281.1 mRNA upstream 285650 61407642 ~ 61415055 (+) False LOC118941510
XM_036955282.1 mRNA upstream 285650 61407642 ~ 61415055 (+) False LOC118941510
XM_036955298.1 mRNA downstream 39995 61746138 ~ 61852881 (+) False trim9
XM_036955299.1 mRNA downstream 39995 61746138 ~ 61852881 (+) False trim9
XM_036955300.1 mRNA downstream 40134 61746277 ~ 61852881 (+) False trim9
XM_036955301.1 mRNA downstream 40134 61746277 ~ 61852881 (+) True trim9
XM_036955307.1 mRNA downstream 157494 61863637 ~ 61898665 (+) False pygl
TU1883513 other upstream 139621 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 355551 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 408864 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 497353 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 961748 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 438040 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 780858 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 1310812 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1369006 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1496613 63202756 ~ 63204057 (+) False G1647477

Expression Profile