G1646296


Basic Information

Item Value
gene id G1646296
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61595114 ~ 61610357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1883519
GTTTCCACTCTTAAGATGCACAAAAAAAACTCCACCACAAAAATACCAAACAGTGTAAATgcagattttattttttaatgacaATTGTATTTTCAAAACGTGATGTGTACAGGACATTTAATGAAGCCCTTACCTCCTGCCTTGGAGGTTTGAGctgggggttgtttctggacaaggccttgctatcaaatcaaatgtatttataaagccctatttacatcagctgatatctctcaaagtgctgtacagaaacccagactaaaacccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgccgggtagagaggaaccaggctatgaggggtggccagtcctcttctgtctgtgccgggtagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgccgggtagagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcagggtcaaataataataatcacagtggttgtcgagggtgcaacaagtcagacacctcaggagtaaatgtcagttatcCTTCTCCTGAAAGCGTGGTCCCTCTCCAAAGCCTTTTATATTGGCCAGGGTGTCGACATCTACATTCATCTCAGTGGACTGGTTACGACCTGAACTCTCCTTATAACCATCATCTAAATCAGGATTACAATGCTGCATCCCTCCTAACAGATCACTCTATTTCCTGTGACCTCACAACCAGTCTCAGTAGTCAGTCCActggtgaggagagagtctgttgaacattgtgttcctcttgagttcaaagacgaccagtctgagtagagtctgatgaacattgtgttcctcttgagttcaaagacgaccagtctgagtagagtctgatgaacattgtgttcctcttgagttcaaagacgaccagtctgagtagagtctgatgaacattgtgttcctcttgagttcaaagacgaccagtctgagtagagtctgatgaacattgtgttcctcttgaGTTCAAAGACGACCAGTCTGAGTAGAGTCTGTTGAACATTGTGTTCCTGTTCTGGTAAAAGTTCAGGTCAGTCCGTCTGTGGAATGGAGTTGAAAAACAACCAGTCTGACAGGAAATCAACAAGGCTGAAGGTGTAACAGTGGTGTCCAACATCCTCAGGGCAGGTCCACATGTTGAGGAAGGAGTCAGACTTCATGTCCCTCTAGTTTGGCAAATAGAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1883519 True 1308 lncRNA 0.45 2 61595114 61610357

Neighbor

gene id symbol gene type direction distance location
LOC118941510 LOC106603467 coding upstream 165657 61407641 ~ 61430060 (+)
LOC118941509 LOC106603467 coding upstream 193850 61392572 ~ 61401264 (+)
LOC118941508 LOC106603467 coding upstream 212768 61362432 ~ 61382346 (+)
LOC110498404 LOC105025554 coding upstream 289983 61242422 ~ 61308910 (+)
xdh xdh coding upstream 657917 60888364 ~ 60937197 (+)
LOC110498259 LOC106603387 coding downstream 90348 61700705 ~ 61707803 (+)
trim9 trim9 coding downstream 135781 61746138 ~ 61852881 (+)
pygl LOC106611459 coding downstream 253280 61863637 ~ 61899051 (+)
LOC118941521 NA coding downstream 270973 61881330 ~ 61882333 (+)
nin LOC106611458 coding downstream 313969 61924326 ~ 62009301 (+)
G1646295 NA non-coding upstream 15394 61562800 ~ 61579720 (+)
G1646297 NA non-coding upstream 29699 61564858 ~ 61565415 (+)
G1646279 NA non-coding upstream 47212 61547203 ~ 61547902 (+)
G1646283 NA non-coding upstream 84602 61509834 ~ 61510512 (+)
G1646270 NA non-coding upstream 93106 61457461 ~ 61502008 (+)
G1646303 NA non-coding downstream 48024 61658381 ~ 61659072 (+)
G1646316 NA non-coding downstream 98790 61709147 ~ 61709382 (+)
G1646317 NA non-coding downstream 99033 61709390 ~ 61709626 (+)
G1646318 NA non-coding downstream 100601 61710958 ~ 61711183 (+)
G1646294 NA other upstream 34030 61558041 ~ 61561084 (+)
G1646225 NA other upstream 249960 61344787 ~ 61345154 (+)
G1646089 NA other upstream 391762 61200860 ~ 61203352 (+)
G1645444 NA other upstream 856157 60718758 ~ 60738957 (+)
G1646509 NA other downstream 533826 62144183 ~ 62145290 (+)
srsf5a LOC106611464 other downstream 876644 62486921 ~ 62493719 (+)
G1647342 NA other downstream 1406598 63016955 ~ 63018688 (+)
G1647411 NA other downstream 1464792 63075149 ~ 63077143 (+)
G1647477 NA other downstream 1592399 63202756 ~ 63204057 (+)

Expression


Co-expression Network