G1646295


Basic Information

Item Value
gene id G1646295
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61562800 ~ 61579720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1883516
acctacacacacaccatggctgggttcaattcaaattcagcccaacccctgagggacctacacacaccatggctgggttTCATTGATCATAAACAAGAGCCTCTAATGCCCTGCACTAATGACTGTCCAGTGTAGCAGGCCTGTAAAACACACTTCACAACGGGGAATCTCCATTGAACATCATTTTTTTTAGGATTTATCTACATCTGAGAAACTGGCCCTAGGAGATCTCATTTGATTTAAACCGGAGAACCTGTTGCCAGACTAGAATTAACATAAAACTCAAACGATCGTGGTGTAACAAAGCAAAGTGACAAAACATACCCACTGATAGGCTAGATGAAATGTTTAAAGAGCCAATCACATAGGGTTTCCACTCTTAAGATGCACAAAAAAACTTTAATGAAGGGAATGTCATACATTATTTAATACAATCAGGGATTTCTTTTACATacagccgcggcttttgtggagcgatgggtaacgatgcttcgaggggtgactgttgttgatgtgtgcagagggtccctggttcgcgccccgggtatgggcgaggggacagtGTAAAGTTATGTTACATTGGTGCCTTGGAGGTAAGGGctgggggttgtttctggacaaggccttgttatcaaatcaaatttatttatatagcccttcgtacatcagctcaTATCTctttcagaaacccagcctgtacagaaacccagcctaaaaccccaaacagcaagcaatgtaggtgtagaagcacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgctgggtagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgctgggtagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgccgggtagagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcagggtcaaataataataatcacagtggttgtcgagggtgcaacaagtcagacacctcaggagtaaatgtcagttatcCTTCTCCTGAAAGCGTGGTCCCTCTCCAAAGCCTTTTATATTGGCCAGGGTGTCGACATCTACATTCATCTCAGTGGACTGGTTACGACCTGAACTCTCCTTATAACCATCATCTAAATCAGGAGAACAAACCTGCATCCCTCCTAACAGATCACTCTATTTCCTGTGACCTCACAACCAGTCTCAGTAGTCAGTCCActggtgaggagagagtctgttgaacattgtgttcctcttgagttcaaagacgaccagtctgagtagagtctgatgaacattgtgttcctcttgagttcaaagacgaccagtctga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1883516 True 1402 lncRNA 0.46 2 61562800 61579720

Neighbor

gene id symbol gene type direction distance location
LOC118941510 LOC106603467 coding upstream 133343 61407641 ~ 61430060 (+)
LOC118941509 LOC106603467 coding upstream 161536 61392572 ~ 61401264 (+)
LOC118941508 LOC106603467 coding upstream 180454 61362432 ~ 61382346 (+)
LOC110498404 LOC105025554 coding upstream 257669 61242422 ~ 61308910 (+)
xdh xdh coding upstream 625603 60888364 ~ 60937197 (+)
LOC110498259 LOC106603387 coding downstream 120985 61700705 ~ 61707803 (+)
trim9 trim9 coding downstream 166418 61746138 ~ 61852881 (+)
pygl LOC106611459 coding downstream 283917 61863637 ~ 61899051 (+)
LOC118941521 NA coding downstream 301610 61881330 ~ 61882333 (+)
nin LOC106611458 coding downstream 344606 61924326 ~ 62009301 (+)
G1646279 NA non-coding upstream 14898 61547203 ~ 61547902 (+)
G1646283 NA non-coding upstream 52288 61509834 ~ 61510512 (+)
G1646270 NA non-coding upstream 60792 61457461 ~ 61502008 (+)
G1646271 NA non-coding upstream 79056 61456440 ~ 61483744 (+)
G1646273 NA non-coding upstream 96405 61466120 ~ 61466395 (+)
G1646293 NA non-coding downstream 8107 61587827 ~ 61648085 (+)
G1646296 NA non-coding downstream 15394 61595114 ~ 61610357 (+)
G1646303 NA non-coding downstream 78661 61658381 ~ 61659072 (+)
G1646316 NA non-coding downstream 129427 61709147 ~ 61709382 (+)
G1646294 NA other upstream 1716 61558041 ~ 61561084 (+)
G1646225 NA other upstream 217646 61344787 ~ 61345154 (+)
G1646089 NA other upstream 359448 61200860 ~ 61203352 (+)
G1645444 NA other upstream 823843 60718758 ~ 60738957 (+)
G1646509 NA other downstream 564463 62144183 ~ 62145290 (+)
srsf5a LOC106611464 other downstream 907281 62486921 ~ 62493719 (+)
G1647342 NA other downstream 1437235 63016955 ~ 63018688 (+)
G1647411 NA other downstream 1495429 63075149 ~ 63077143 (+)
G1647477 NA other downstream 1623036 63202756 ~ 63204057 (+)

Expression


Co-expression Network