RNA id: TU1883626


Basic Information

Item Value
RNA id TU1883626
length 2227
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1646345
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61755875 ~ 61760275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtatagtagacctgacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgttgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaacttacagtgaaatgatgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaagtgtagtagacctcagagtgaaatgctgaatacaacaggtgtagtagcccttacagtgaaatgctgaatacaacaggtgtagtagaacttacagtgaaatgctgaatacaacaggtgtagtagaacttacagtgaaatgctgaatacaacaggtgtagtagaacttacagtgaaatgctgaatacaacaggtgtagtagaacttacagtgaaatgctgaatacaacagctgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagacctcacagtgaaatgctgactacaacaggtgtagtagacctcacagtgaaatgctgactacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttatagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtatagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgttgaatacaacaggtgtactagcccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaagtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883581 lncRNA upstream 10873 61742083 ~ 61745002 (+) False G1646335
TU1883580 lncRNA upstream 10873 61743291 ~ 61745002 (+) True G1646335
TU1883584 lncRNA upstream 11686 61742755 ~ 61744189 (+) False G1646335
TU1883583 lncRNA upstream 12464 61742755 ~ 61743411 (+) False G1646335
TU1883576 lncRNA upstream 17347 61738291 ~ 61738528 (+) True G1646332
TU1883647 lncRNA downstream 35927 61795814 ~ 61796064 (+) True G1646361
TU1883669 lncRNA downstream 70103 61829990 ~ 61834510 (+) False G1646379
TU1883677 lncRNA downstream 70103 61829990 ~ 61831711 (+) False G1646379
TU1883667 lncRNA downstream 72339 61832226 ~ 61835913 (+) False G1646379
TU1883676 lncRNA downstream 72339 61832226 ~ 61834510 (+) True G1646379
XM_036955297.1 mRNA upstream 49732 61700705 ~ 61706143 (+) False LOC110498259
XM_036955279.1 mRNA upstream 326418 61421677 ~ 61429457 (+) False LOC118941510
XM_036955280.1 mRNA upstream 326418 61421677 ~ 61429457 (+) False LOC118941510
XM_036955281.1 mRNA upstream 340820 61407642 ~ 61415055 (+) False LOC118941510
XM_036955307.1 mRNA downstream 103750 61863637 ~ 61898665 (+) False pygl
XR_005037827.1 mRNA downstream 121443 61881330 ~ 61882333 (+) False LOC118941521
XR_005037828.1 mRNA downstream 121443 61881330 ~ 61882333 (+) True LOC118941521
XM_036955305.1 mRNA downstream 164439 61924326 ~ 62005651 (+) False nin
XM_036955304.1 mRNA downstream 164439 61924326 ~ 62009301 (+) False nin
TU1883513 other upstream 194791 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 410721 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 464034 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 552523 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1016918 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 384296 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 727114 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 1257068 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1315262 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1442869 63202756 ~ 63204057 (+) False G1647477

Expression Profile