RNA id: XM_036955323.1


Basic Information

Item Value
RNA id XM_036955323.1
length 8233
RNA type mRNA
GC content 0.52
exon number 23
gene id sos2
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62276111 ~ 62379517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGCACTCTGTGTTTACGCAAACTCACTGCCTGTCTACGCAGGACGCAAAGTGAACTGGCCGAGATTCGGGCACCGACGTTGAGTTAAGAGTTGAGGGACGAAACATCTCCAAcgataacaacaacaaaaaacaacacatcAACAAAGCGCTTCTTGTGCCACTGGACACTGGATAAACATGCCTCTGACTTATTCTAAATGGGATTGTTATTGAAGTGCGCGATTTAACCCGATGCGGAAGATATGATGGGGATGATTGTCGAAGTAAACACAGGAGAAAGTTTACTCCTTTTGGAATATGAATGAATAGTCTTGATGCCACAACATAGCTAACTCACAGTGCACCAAGGCCATGATAGACAGCCTTTGCATACAGATGTCTTctctctagctagctagctaggtaatagCGCTAAGCCTAAGTTACAGTAGGCAGTAAGTAACATTATACGTTCAGTCGTGACATTTAATTGAAATGGCTAACTAGCTggctatatgttttttttttgtttttatctaCCAGGCTAACTATCTAAAATAGCAATAGAGTTTGccagttagctaactagctaatcaTTGGTTTATCTAGTTAGCTAGAAACGCTTGAAAGGAAAGCCCGAGTTGGCTAACTAATTAGCTAGCGCACTAGGCGAGCTAACATATCAACTAGCTAGTAAATGAGACCGCTAACGAGTTGCTAGCCTAGCTTAGCCTAGCCTAGCTTAGCACTTTGTCCAATTTGAATCTCAGGTTATCGCTAACTAGTTTATATATGTGCTTTGCACTTCAATTAGCTCGCTAACAGtaagacatgttttttttttctttctagtTAGCATTTCCAAACTTTGCTCGATTTAGTGTACGGTTTAGctagtgttttatatatatatctcttagTTAGCTCAAGCTGCCTTTTCCACCGTGCCTGGACTGACCGACCCGCACCAGGACAAGCCGGGGCCGATGCTGACAGTCCGGATCACGGCAACAGTAAGGAGCCATGCAGCCGCAACAAATATACGACTTTTCAAGTGACGAGAACAGTCACAAATGGCGAGGCCTCTTCGTCCAAGCGTTGCGAAAGgtgCAGCTGCAGGTGCACCCCAACCTGTCAGCCACAGAGGGCGCTCTGCAGCACATCGAAGAGCTCATCCTGCAGCTGCTCAACATGCTGTGTGTGGCCCAGCCGCGCTCTGTACAGGACGTGGAGGAGCGGGTCCAGAAGACTTTCCCCCACCCCATAGATAAATGGGCCATAGCTGACGCCCAGTCAGCCAtcgagaagaggaagaggaggaacccCCTACTGCTCCCTGTGGATAAGATACACCCTCTACTCAAGGAGGTGCTGGGTTATAAGATAGACTACCACGTCTGCCTCTACATCGTGGCGGTTCTAGAGTACATATCAGCTGACATCCTGAAGCTAGCAGGAAACTACGTTGGTAACATCAGACACTATGAGATCAGCCAGCAAGACATCAAGGTGTCCATGTGTGCAGACAAGGTCCTAATGGACATGTTTGACCAGGACGAGGACATCGGTCTGGTGTCTCAGTGTACGGAGGAGCCTTCGTCGTCGGGGGAGCTGACCTACGACGACCTGGTGCGCCTGGAGATTGCAGAGGAGCGCCAGTACCTGCGGGAGCTCGACCTCATCATCAAGGTGTTCCGACATCACTTCCTGTTCAACAACAAGATCTTTACGCCTCAGGATGTGGAGGTGATTTTCAGTAACATCTTGGACATCCATGAGTTGACGGTCAAGCTGCTGGGCCTGATCGAAGATGCAGTGGAGATGACCGCTGACGGTAGTCCACATCCTCTGGTGGGCAGCTGCTTCGAGGACCTGGCAGAGGAGCAGGCGTTTGACCCATACGAGACCCTGTCTCAGGACATCCTGTCCAGGCAGTTCCACGAGCacttcagcagtctgatggcccggcctactgtaggactatacTTCCAGtccaTAGCTGAAGGTTTCAAGGAGGCGGTTCAGTACGTCCTGCCACAGCTCATGATGGTTCCTGTATACCACTGTTTGCACTACTTTGAACTACTGCAGCAGCTGCAGGAGCACAGTGAGGAGCAGGACGACAGGGAGTGTCTGAAGCAGGCCATCACCGCTCTGCTCAACCTCCAGTGTAGCGTGGAACGCATCTACACCAAACACCTGCCCCGACGCAAGCCTGGCGAGCCCAAGTACCGTCTGTACAGTCGTCAGGTGCGCAGCAAGCAGCTGGCCATCAAGAGGATGAACGAGATCCAGAAGAGCATCGACGGCTGGGAGGGGAAGGACATCGGCCAGTGCTGTTCCGAGTTCATCCTGGAGGGGGCGCTCCTCCGCGCCGGCGCCAAACACGAGCGACACAACTTCCTGTTCGACGGCCTCATGATCAGCTGCAAGGCCAATCAGAGCTCCCGACTCCCCGGTTCCGGAAGCGGGGCCGAGTTCCGTCTCAAGGAGAAGTTCGTCCTGCGGAAAGTCCGCATCGTGGACCGCGAGGACTCGGCGGAGTTCAAACACGCCTTCGAACTCGTCGGTAAAGACGAGAACTGTGTGGTGTTCTGCGCCCGCTCGGCGGAGGACAAGGGGGCGTGGATGGCGGCGCTGGTCACCCTGCAGTACCGCTCCACGCTGGACCGTATGTTGGACACGGTTCTGCAGCACGAGGAGCAGGCCcagcccctccgcctgccctcgCCAGAGCTATACCGCTTCGCTGTGCACGACTCGGAGGAGAACATCGTGTTTGAAGATCGCGTCCAGAGCAAGACGGGGATACCCATTATTAAAGCAGGCACGGTGGTCAAGCTTATAGAGAGGCTCACCTACCACATGTATGCTGATCCCAACTTTGTGCGCACTTTTCTGACCACCTACCGGTCCTTCTGCAAGCCCCACGAGCTCCTCGGCCTCCTGATAGACAGGATTGAGATCCCAGAGCCGGAGCCCACCGAAGCAGACAAGCAGGCGCTATGGAACGGAGATCAGCCAATGGCTGCAGAGCTACAGAGGTTCCGGAGGGAGTACGTCCAACCGGTCCAACTCAGggtcctGAATGTGTTTCGTCAGTGGGTGGAACATCATTTCTATGACTTTGAGAACGACCCCGAGCTACGAGGCAGACTGGAGGAGTACATCAGCAGCATTCTACAGCTACGAGGAAAGTCTATGAGGAAGTGGGTGGAGTCTATCAACAAGATCATCAAGAGGAAGATGCAGACTCAGTCCAACGGGGTCAGCCACAACATCACCTTCGAGAGCCCGCCCCCGCCCATCGAGTGGCACATCAGCCGCCTGGGTCAGACGGACACCTTTGACCTCATGACCCTTCACCCCATAGAGATCGCCCGTCAGCTCACCCTGTTGGAGTCAGAGCTATACAGGGCTGTGAGGCCATCTGAGCTGGTGGGGAGTGTCTGGACCAAAGAGGACAAGGAGAATAACTCTCCCAACCTACTGAGAATGATCCGCCACACCACCAACCTTACACTGTGGTTTGAGAAgtgTATTGTGGAAGCAGAGAACCTGGATGAGAGGGTAGCAGTGTTCACCCGGGTCATTGAGATTCTCCAGGTGTTTCAGGAGCTCAACAATTTCAACGGTGTTCTGGAGGTGGTCTCCGCCATCAACTCTGTCCCTGTCTACCGGCTCGATCACACCTTTGAGGCGGTCCccgagaggaagaagaggatccTAGAGGAAGCAGTGGAACTGAGCCAGGACCATTTCAAGAAGTACCTGGCCAAGCTCAAGTCCATTAACCCTCCCTGCGTGCCTTTCTTTGGTATCTACCTGACCAACATCCTgaagacagaggaggggaacccCGACTTCCTGAAGAGACACGGCAAAGAGCTGATCAACTTCAGTAAGAGGAGGAAAGTAGCAGAAATCACAGGAGAGATACAGCAGTACCAGaaccagccgtactgtctcaagGTGCAGCAAGACATCAAGAGGTTTTTTGAGAACCTGAACCCGATGGGCTGTCTGGGTGAGAAGGAGTTCTCTGACTATCTGTTCAACAAGTCTCAGGAGATTGAGCCTCGCAACTGCAAGCAGCCGCCACGATTCCCCAGGAAGACCCTGTACCCCCTGAAGTCCCCGGGGATCCGGCCGGTGCGCACCTCTACGTCAGGGACCCTGAAgggccaccctgtacccctggaGAGAGAGCCCCCGCACAAGATCACCTTCAGGAGCATCGCTGAGACGGAGCATGAGACCTCTTCCGTAGCCTCGGTCCCCACCTCACCCAACACCCCCACCCCTCCGCAGTCGGCCACCTCAGACCTCATCTCTGTCTTCATGGAGCAAGACCTCTGCAACTCCTACGGTGGAAACTCCATATTCGCTAATGTACTCCTCCCACCCTCAAAGGTCCAGTCAGTATCGTGTGGAAGCCTTCACCAGCTAGGAGAGGACTTACTCAAACCCCCTCCACTTCCCCCGCGCAGGAAGGATGCTTTCTCTGAGACCAagTTGAGTTCCAGGTCTGACAGTCCTCCAGCCATCCCGCCCAGgctgccccctcctctccccaggatCCAGCCCCGCGCCCCGGTCTACAATGGCCCCAGCGACGGCCCCCTCTCcagccccccaccaccacctccccgGGACCCCCAGCCAGACACCCCTCCACCCGTCCCCCAGAGACCCCCAGAGATCTTCATCAACTACCCCCTGAACCTTCAACCTTCCCCTGTCGGACGCTTCCACTGGGACTTTGGCAGCTCCCCTTCATCCCCCGGCACACCCCCGGGCACCCCCTCTCCCCGCGTCCCCCGACGGAGCTGCCCCCTCAGCGCTAGTCAGAACAGTCTCTGCCCTCTCCCGCTGCCCATCATGGCGCCCCCTGTGCCACCTCGCCACAACTCCAACTCCTCCCCCCAGCTCCCCAAACTCCCCCCAAAGACCTACAAGAGGGAGCTGTTGCCGCCCCCGTTACAGAGCCTCTCATTGGTGGAGAACACGGACACTAGCCAATGAGGAGCCTTCTGCTTCTTTTGTTATTGTTTTCGTTGTCAACATGGAAGCCTTTGAGTTTCTCCACACAATACAAACTGCAAACAAACTATGTCCTACATTAAACTATGAACTAATGACCTGCATCAGACTATGAACTATGACCTATGACCTAGAGCGGatgaaaacaaacaaactaaTCATGATTTTAAAGCTACTGATCGTAAAGAAGACTTCGTTTCCAACCACACTCCAAACCACGCCCACTTCATCTCCTGCCACGCCTCTCAGGAATCAGTAGCTCCGCCTTCATGCCAATTGAAAATACACCACAGTGTGCCAGCCAATGAACAAGTAGCCTCAAGATTCTAACTCCtcctctctgtgggtgtgtgtgtgtgtgtgtacgttggtgtgtgtgtgtgcgcgtttcaCATACCTGTACACAGCACAGCACATGTCAGTGCGTTTCTTTCTTGGTACAGACGTCCCACTCTGTGCTAgagtggacaggacaggacaggacagcaagCTATGCTCTGGTAGTTGCCCTTCTCCTACCCtgacagttaaaaaaaaaacgtttttaccCCGGGTTCTCCAGCCTGTCCTGGTCCAGTTCGGTAGCCCCATGCCCCATGTGTTTGTGATTCCGTTGTTCCATTGGCACACTGTAGTGCTAGGAGCAGCATTCACTCACTTACCcaggagtcagtcagtcagtcctgtcCTGTGGCTCGCAGACTTGACAGTCACTGGACCTATTCGGACTTCACTGCTCTTTAATGATCAAAACTTATCAATTGCTCTTCCCGCGGTTCTGTACCGCGGTTCTGTCTGGAGATATCCTCTGAGGCCTCTCAACTCTTCCCATTTGTGTTCTGTCGTTCTCTAATAATCTCTAACTTTTGTAGCCAACGTTTCATTTGATGCAGGGTGAAAACTTAAGggatacattttatttttgaggAATGATAAGACCAACTAAAAAAAAATGGGATGCAAAttgtatttcattcattcagaactgactgactgaaagCGTTCAGGAAAAAGGTGTGCGACTATTGaataaacacccccccccccccatcccccccccccttggtCGTAGCTACACCCTCTACTTCAGATGTTAGCCTTTAATCCCACAGCACTGACCTCTAACCTGAGGCCAGGGGAGCCATtcagaatgagggagagagaccgaCGGATGGACATATCGGAAGACAGATTGGCGGagagtgtagtgtagggtaggatCCACTTTTAACTGGGGCAGGGCAGCAGTGACGTCTACTCGTCTACCCTCGTCAGTCATGTGATGGGAGAAGTCTGTTTGTGTCTGGACTATAGAAAacgatagaggcctctagtggccaaaaggctatattagcatgggcagcgccattgagggcttccaccgtGCTTccgccattttaaagtagtcaaggtggacaactgggtggggattcctgtGAGTTgttgcctcaatggcgctgcccatgctgtcacagatgctACAATGGCACTGATATAAATGAGTCCTCTGTCTCTATGGAGCTGCCTATGCTGTCACAGTGCTGATATAAATATGAGTCCTCTATCGATCTCTATggagctgcccatgctgtcacagtgCTGATATAAATATGAGTCCTCGATCTATCTCTATggagctgcccatgctgtcacagatgctataatGGAGCGGATATaaatgagtcctctatctatctctatggagctgcccatgctgtcacagacgctatAATGGCGCGGATATAAATGAGTCCTCGATCTATCTCTATggagctgcccatgctgtcacagacgctatAATGGCGCGGATATAAATGAGTCCTCGATCTATCTCTATGGAGCTGCCCATGCTGTGACAGATGCTATAATGGCGTGGATATaaatgagtcctctatctatctctatggagcTGCCCATGCTGTGACAGGTGCTATAATGGCACTGATATaaatgagtcctctatctatctctatggagctgcccatgctgtcacagtgCTGATATaaatgagtcctctatctatctcttatGTCTGCACAAAGCCCAGATCTCGGGAAGAAGAGTAGGATGAGTGACAACAACATTGAGATATCTCATTCTCGGGCCAGGGAGGCGGTAACTATAGCAGCCAGACATTTCTTTCTCCGTCTCCTTGAAgtgatactttgggattttgccAGTGtaacttccccagagtcagatgatctTGTGTATACCATTGTTACATCTCTGTGTCCAGCGTGAAGGAGGTTTAGAGGTAGTTTCTTGAGCCAgcgctaactagcgttagcgcccATGACTGGAAGTTTATGGGTATCTACTAGCACGTTCCTTTTAAAGCTAGcccggtcccagatctgtttggccTTTTGGCCTACTCTGTTCTCTTATGGCTATTTGTCATGTTGATTCCATATGGCGTGGGCAAGAACAGACCTATAGCCAGGCTAGCTGAAAGCCAAGATGATGTCTTAACCCAAACTAAGTGCCCCTAAAAGTTGtatgctgctgtctgtctgtccagaacTATCTGCAGCTCTACTACCATCATACCCAGTACTGTACCAGCCTGCAGTGTTGGTATGGAAATTCAGCACTGGACTCCTCATACGCAGCAACCCCAACAAAGCCTGGAACAAATGGACAGTTGGCTCCTCTAGTGGACAAATTGGGGATTGCTCCACAGCTCCCCTAGTGGATAGGAGGACAAACAGCTCCTCTAGTGGACAAACTGGGGACTGCTCCACAGCTCCCCTAGTGGATAGGAGGACAAACAGCTCCTCTAGTGGACAAACTGGGGACTGCTCCACAGTGCCCCTAGTGGATAGGACAAACAGCTCCTCTAGTGGACAAACTGGGGACTGCTCCACAGCGCCCCTAGTGGATAGGAGGACAAACTGGGGACTGCTCCACAGCGCCCCTAGTGGATAGGAGGACAAACAGCTCCCCGAGTGGACAAACTGGGAACAAGTGGCTGTTTCAGATATCTGGATTCACATCGAGAAGAAGCCTCTATTAACCAGATGtcactgtcctcctctctctctctctctctctctctcctctcaaataTGCCATTTCATTTTAAAATACTGAAATAACATGCATCATGCTCAGATGTGCCTTTTTTTGATTTTGTTTTCTTTACAGAGTAAGCGAAAGGTGTCTTTTTTTAAATGCTATTAAAAAAACTGATATGATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883840 lncRNA upstream 118452 62157339 ~ 62157659 (+) True G1646511
TU1883838 lncRNA upstream 118868 62148751 ~ 62157243 (+) False G1646510
TU1883839 lncRNA upstream 118868 62149956 ~ 62157243 (+) True G1646510
TU1883816 lncRNA upstream 185550 62090347 ~ 62090561 (+) True G1646491
TU1883814 lncRNA upstream 186629 62089162 ~ 62089482 (+) True G1646489
TU1883775 lncRNA downstream 34851 62414368 ~ 62446035 (+) True lgals3a
TU1883952 lncRNA downstream 69291 62448808 ~ 62449040 (+) True G1646607
TU1884004 lncRNA downstream 163627 62543144 ~ 62543659 (+) True G1646642
TU1884011 lncRNA downstream 180689 62560206 ~ 62560803 (+) True G1646649
TU1884013 lncRNA downstream 182249 62561766 ~ 62562776 (+) True G1646650
XM_036955320.1 mRNA upstream 2747 62248727 ~ 62273364 (+) True l2hgdh
XM_036955321.1 mRNA upstream 31830 62217103 ~ 62244281 (+) False cdkl1
XM_036955322.1 mRNA upstream 31832 62217121 ~ 62244279 (+) True cdkl1
XM_036955316.1 mRNA upstream 65658 62095441 ~ 62210453 (+) False map4k5
XM_021574895.2 mRNA downstream 39839 62419356 ~ 62422349 (+) True cdkn3
XM_036955331.1 mRNA downstream 63626 62443143 ~ 62445944 (+) False lgals3a
XM_036955330.1 mRNA downstream 63627 62443144 ~ 62445944 (+) False lgals3a
XM_036955332.1 mRNA downstream 75600 62455117 ~ 62460307 (+) True LOC118941522
XM_036955334.1 mRNA downstream 86737 62466254 ~ 62485447 (+) True LOC110504280
TU1883836 other upstream 130821 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 715027 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 930957 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 984270 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 1072759 61202358 ~ 61203352 (+) True G1646089
TU1883744 other downstream 107484 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 637438 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 695632 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 823239 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 1012108 63391625 ~ 63391832 (+) False LOC110498409

Expression Profile