RNA id: XM_036955320.1


Basic Information

Item Value
RNA id XM_036955320.1
length 4441
RNA type mRNA
GC content 0.46
exon number 10
gene id l2hgdh
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62248727 ~ 62273364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATACGGACACTAAACAGCGCGTCATTTGCTGCCTTATTTGCAACGGTGCCAAAGTCCACGACATGCAGAACAGCTAGAATACACAGTACGTATGATGTGGCTGTGGTGGGTGGCGGCATCGTGGGCCTGGCCTCAGCCAGAGAGCTCATCCTCAGACACCCCACGCTTAGCTTCATTCtgctggagaaggagaagaaccTGGCCATCCACCAAAGCGGCCACAACAGTGGTGTGATCCACAGTGGGATTTACTATACCCCCGGGTCTCTGAAGGCCCGTCTCTGTGGCAAAGGGGCCACTATGGCCTACGAATACCTGGACAAGAAAGGACTCCCCTATAAGAGGTGTGGAAAGCTGATCGTCGCTGTGGAGCGAGAGGAGATTCCCAGGCTCAAAGCGCTGTACGAGCGAGGACAGAAGAACAACGTGCGTGACCTCACCATGATAGACGCCAAGGGGATCCGAGAGAGAGAGCCCTACTgcaggGGTCTGATGGCCCTGGACTCTCCTTACACTGGCATCGTGGACTGGAGGCTGGTGTCACTGGCGTATGGCAAGGACTTCCAGGAGGCAGGAGGGACCGTGGTTACTGAATATGAGGCCAGTGACATGGCCATGGTGAAGGAAAGCCCCGCTGGTAACACTGACGGAATGAAATATCCCATCGCTATCAGAGATTCAAagGGTACGGAGGTAAGGTGTCGGTATGTGCTGACCTGTGGTGGTCTGTACTCTGACCGCCTCGCTCAGATCTCTGGCTGCAGTCCAGACCCTCGCATTGTCCCCTTCAGAGGAGATTACCTGGTCCTGAAGCCTGAGAAACACTACCTGGTCCGGGGCAACATCTACCCCGTTCCTGACCCTAGGTTCCCCTTCCTGGGGGTCCACTTCACCCCGCGGATGGACGGCAGTGTTTGGCTGGGTCCCAACGCCGTCCTGGCCTTTAAACGAGAGGGATACAAGCTGTACGACTTCGATGCCCGGGACTTTGGAGATGCACTTTCATTCAGAGGTCTGCAGAAACTGGTGATGAATAACCTAGTGTATGGTGTTGGAGAGATGTACAGAGGGGTGTTCATCGGAGCACAGGTCAAGATCTTAAAGAAGTTCATCCCAGAGCTGTCTCTAAGCGACGTCCTCAGGGGTCCAGCAGGGGTGAGGGCCCAGGCTCTGGACCGCGATGGGAACCTGGTAGATGACTTTGTGTTTGACGTTGGTGTCGGGGATGTGGGCAGCAGGGTCCTCCATGTACGCAACGCTCCCTCGCCCGCCGCCACCTCTTCCCTGGCCATAGCAGAGATGGTAGCAGACGAGGTGGAGAGACGTTTCAGCCTCTAAAAACTCTAGAGGCGCTCTTCGGATGCTTACCAAATGGCATCCCATTCCCTACTTTTTGAGTTCtgcgcacaacttttgaccagagcccacagggaatagggtggcatttggggcGTACTTACACTTCCCCAGTGGAAGGAAGTAACAACATTATATCACATCTAGTGATATAGTGAAGTGTTGATGATGCTGATCTCAGGTCAGTTCTGCATTTTCCCCAATGGTTAGTTTGGAGTGGGGGTGAGTGtaagctgatcctggatctgcGCCAAGGGGCAACTTCACCAGGAAATGATCCATCCAATCTGTTAACTACTGCTCACTGGTCCAGCATCTGCGTCAGCAGAGTGAGGTTACAAAAAATCCGCTAACTttccaaaattcccaggttttccagaaatccagaTTGGAGGATTCCAGGATTATCTGCTTAGTTCCTCCTTAATTGCAGGAATAATCCAacagggatttctggaaaactcgGGAGGTTTGTAAAGGTTACTGGAATTTGCAACCCGACAGCAGAGTGGTCAGGCCAGAATGGAGTAGACAGAGCAGCATGTACTGAACAGAGCATGTAAAGTGcgttcggaaaatattcagacaccttgattttcccccccaccccaccctaaatttggttacgttacagccttatttccctcaacacacacaataccttataatgacaaaacgaaaacacgtttttagaaatactttctgaatgctttctgaatgcattgtagaTGAGAAGATTAGAGGGTAATTGTGGTCTATAGGATCCCTTAAGAAGCAAAGGGCCTAGACTGGGGTTGAATATTTTCCCAGTGTTTTACATGTTCCGTCccgagaataaatcacttttctccgTGGTAACCCGGTATTTCCCATCAAAAccggaagtgtcattcaaaagcattataaagcATATAAGTAGGTCCATGTCTGGTTTTGAATAGAGCTTTGATAGAAAATTCAACCCTGGGGCCCTcctgagtgacgcagcggtctaaggtactgcatcgcagtgctcgaggcgtcactacagaccctggttcgatctcaggctgtcacaaccggccgcgaccaggagtcccatagggaggtgcacaattggcccatcgtcgtccgggttaggggagggtttggaaaggggggggggggggtttacttgAATCATTGCGATCTtacgactccttgtggtgggccgggtgcctgcaggctgacttcagttGTCAGTtcaatggtgtttcctccgacacattggtgcagctggcttccgggctaAGCAGTTATGACCCACCAAGCTGCGCTTCCTGTTTCGGAGGAcgtatgactcgaccttcgcctctcccaagctcgttggagagttgcagcgatgagacaagatcgcaattggggagaaaatggggGTAAAATACCCAAAAATTAACTAAAATATTAAGAAAATTCAAGCCTGATGGgtcctacattaaagacatttaatgagcccaatCCCCCAAAAAGCCCAAATAATTGTGCTGTTTTCCAATAGATATATCATATAGGCTACTGCACATTACACATGACAGAAAAACATAAATTCCCATAGATGGAGCTATAGATGAAGCTAGCTAtatgctctcttgggtaaataaaACTAGCTCCAGTTGGCTAATATGTTTTgagtgtgaactgtattactgtactgtattatattaaATGGACTAGAATTACATACATCCTTCGACCCATGAtaagcagggagagagaacatGCGATTCTGGTGCAGCACATGCGGCCTACAAAGTTACAAGTATAGGCTAGCGATTTCGATTTataattttgaaatataatagtGCCTATTTGCATAATTAGTAGGCTGACGCATATGGAGCTTTCATATTTCCCCCTTATGTCATTAGCCTACGTCCTCTCTCtattgttgcttcattccttACCTGGTtttcaacagttaaatgaaaTGTTTCGTGTCCTAAATCATTCTAATGACATCcttgaataatataggactagaattcgatgcagaaggctttcacttctcttcacgAAGATTGAAGGGTtctgggtctgaataaataacggCTATAGTCTACCGCCATCACTCTTTCAAACGATGTGGATGATAGGTCTACGTGCACTGTGGACTGCGTTCCAGACTGAGCAGGGCTGCATGATGGATGAATGTGGATGATAGGTCTACGTGCACTGTGGACTGCGTTCCAGACTGAGCAGGGCTGCATGATGGATGAATCAACGAGCAGGGTGGGGACAGAGGCCGTAGAGAAGACACATTTAGACATCGCATATAATTTAACACTTCCATTTCACCGcatgctgttcatataaataatgtattataatttATCGGGTTCTCACAGTTATTTATCCGGGGGGAAATGAGTGGTTTTGgccagtaaatctcagtaaccgTGTTCGCGCCGTTCAACCCATGTCCATGCTACCGAGGACCAGTTTTCCAGACACAGATTAAATCTAATCTTGGACTAAAAAGCAAATAAAATGGAGAATCTCCGTAGAAATAGCTTTTATACCGACCCCTTAAACGTTTGAAATGTAGTTGGATGCACCAAAAATGAGTTGGTTGCACAGATGATGCCAAGAATTCACCAAGAATGTTCTAAATTAAAGACCTGCTCCACTGTGGTCCTGTATTCTCATGTGATCCCTCTCATTGCTTTGGTTTTGGATAATGACAATGTACAGGAGCGCTAAAAATATGTTTGTGTTCTCCACCATTTCTgctttctgatttttttttttttttttacgcacTGATTTTAGGATGTTTAAAACCATTTATTTTATAATAAACTGAAAATATTTATCAAAGTTTTGCGGTAAGAATACTGCCATTTTTCATTTTGCCGCAGTCACATTCTTTGACAGTGATTGTTTTTGAAAAACGGTGTGATTTTGTTAGCCTCTTTACTGAGATGATATGAAACGGTTTAATGAATTTGTCTACGAATTATAATTCTCTCATTTTGAGATGTGTGATGTGTGAGGTGTACAACTCCAGAGACAAAAGTTTATTACAGAAATTCTATGTATTTTAAATAAATGACTTTTCCCATTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00109 L2HGDH; 2-hydroxyglutarate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883840 lncRNA upstream 91068 62157339 ~ 62157659 (+) True G1646511
TU1883838 lncRNA upstream 91484 62148751 ~ 62157243 (+) False G1646510
TU1883839 lncRNA upstream 91484 62149956 ~ 62157243 (+) True G1646510
TU1883816 lncRNA upstream 158166 62090347 ~ 62090561 (+) True G1646491
TU1883814 lncRNA upstream 159245 62089162 ~ 62089482 (+) True G1646489
TU1883777 lncRNA downstream 2815 62276179 ~ 62276454 (+) True sos2
TU1883880 lncRNA downstream 8417 62281781 ~ 62282159 (+) True G1646543
TU1883884 lncRNA downstream 13471 62286835 ~ 62287087 (+) True G1646547
TU1883885 lncRNA downstream 14253 62287617 ~ 62287988 (+) True G1646548
TU1883888 lncRNA downstream 18928 62292292 ~ 62292507 (+) True G1646551
XM_036955321.1 mRNA upstream 4446 62217103 ~ 62244281 (+) False cdkl1
XM_036955322.1 mRNA upstream 4448 62217121 ~ 62244279 (+) True cdkl1
XM_036955315.1 mRNA upstream 38274 62095441 ~ 62210453 (+) False map4k5
XM_036955323.1 mRNA downstream 2747 62276111 ~ 62379517 (+) False sos2
XM_021574895.2 mRNA downstream 145992 62419356 ~ 62422349 (+) True cdkn3
XM_036955331.1 mRNA downstream 169779 62443143 ~ 62445944 (+) False lgals3a
XM_036955330.1 mRNA downstream 169780 62443144 ~ 62445944 (+) False lgals3a
XM_036955332.1 mRNA downstream 181753 62455117 ~ 62460307 (+) True LOC118941522
TU1883836 other upstream 103437 62144183 ~ 62145290 (+) True G1646509
TU1883513 other upstream 687643 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 903573 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 956886 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 1045375 61202358 ~ 61203352 (+) True G1646089
TU1883744 other downstream 213637 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 743591 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 801785 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 929392 63202756 ~ 63204057 (+) False G1647477
TU1885128 other downstream 1118261 63391625 ~ 63391832 (+) False LOC110498409

Expression Profile