RNA id: TU1883814


Basic Information

Item Value
RNA id TU1883814
length 321
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G1646489
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62089162 ~ 62089482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGCTACATCACGATTCCTACACAAACATCCCTTCAGCTGCATTGCTGAGCCTCTCCGTAGCCTAGTGAACCCCTCATTATGCGGTCTGCAGATGACCAATTTAGTAGTCTTCATAATTATGAACCACTCACCCCAGCTGTCTCTGTCTTTACGGTTTCTCGCCATGGTGTTCCTTGCTGTTGACTGTATGTGCAATCCTAAACGGCTGTCATGAAGACACCGGACCAATGGATGAGCCTATTCAATCCGACACCGAGGAGAAGGCTCATTAAAAGGGAGGATGCTGAAGCTGACGGGGGTTGGGTGTGCAGTATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883811 lncRNA upstream 4821 62083184 ~ 62084341 (+) True G1646486
TU1883810 lncRNA upstream 11448 62077257 ~ 62077714 (+) True G1646485
TU1883800 lncRNA upstream 32566 62042859 ~ 62056596 (+) False G1646476
TU1883798 lncRNA upstream 41676 62042859 ~ 62047486 (+) False G1646476
TU1883796 lncRNA upstream 43340 62042859 ~ 62045822 (+) False G1646476
TU1883816 lncRNA downstream 865 62090347 ~ 62090561 (+) True G1646491
TU1883838 lncRNA downstream 59269 62148751 ~ 62157243 (+) False G1646510
TU1883839 lncRNA downstream 60474 62149956 ~ 62157243 (+) True G1646510
TU1883840 lncRNA downstream 67857 62157339 ~ 62157659 (+) True G1646511
TU1883777 lncRNA downstream 186697 62276179 ~ 62276454 (+) True sos2
XM_036955311.1 mRNA upstream 50269 62020594 ~ 62038893 (+) False sav1
XM_036955312.1 mRNA upstream 50269 62020594 ~ 62038893 (+) False sav1
XM_036955310.1 mRNA upstream 50269 62020595 ~ 62038893 (+) True sav1
XM_036955303.1 mRNA upstream 79861 61924327 ~ 62009301 (+) False nin
XM_036955314.1 mRNA downstream 5959 62095441 ~ 62210453 (+) False map4k5
XM_036955315.1 mRNA downstream 5959 62095441 ~ 62210453 (+) False map4k5
XM_036955316.1 mRNA downstream 5959 62095441 ~ 62210453 (+) False map4k5
XM_036955317.1 mRNA downstream 5959 62095441 ~ 62210453 (+) False map4k5
XM_036955318.1 mRNA downstream 5959 62095441 ~ 62210453 (+) False map4k5
TU1883513 other upstream 528078 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 744008 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 797321 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 885810 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1350205 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 54701 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 397519 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 927473 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 985667 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1113274 63202756 ~ 63204057 (+) False G1647477

Expression Profile