RNA id: TU1883798


Basic Information

Item Value
RNA id TU1883798
length 3843
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G1646476
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62042859 ~ 62056596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttTTAATACAAAATGATGACGATGACTTGTTGTGAACGGTGACGTTACATTATACTGTAGTGTGGAAGACCACGAGGAAGAAACCACTTTGAtgctgctgtgtgtttgtgtctgtgtccgtcccaaatggcatccctactccctatggaccctggtcaaaagtagtgcactgtatagggggCCATTTTGGACTCAGACCTGGGCTAGCGTGTTCATGGCTCTCTGGGAGATTGTTACAGGACAAACCTCTTTGGTCAGACCTTTTATAGACATCCTGCTCGTAACCATAACAACGACCTTACAGGTTACATAAAACATGGAAACAACTAAAATGACCCCGCCGAAAAATAAGCTGTTTTATATTTTTGCGTATACAATAACTTTGATTAGATTATCCTTCAACTGTAGTAATATACACATGGATCGTTGTTTTTCCTCATTAAATTTAACACAATCTACACATTTTTAACAGTCCACCAAGCCCACTGATATATTGTTTTTGCGAACACGAAAAAGCGTTCCCAACAATAACACAACCTCTACTGGTTAACGAGTACAAGCTGTTTGGGAAACTGTGGCTTTTCAGAAGAGAATACCGCACAGCAGAATCAAGGAGTTAACTTGCCTGAATACTCTAAAATATACTTCTATTTCTTAGGAAGATAGACTATAACCATTTCAAGGTTAACTGACTCAACAACCAAAAAACACATACTGTATTAGCTTTTCTTTGAATCAGAAAATCCacagttatttctgttttgtttttttcgaagtccctggctaactcattgatcctgtgTTATAGTACACCCCTCTGGTTCTTTACCATGCAGTAGTACAGATAGACGCCTATGGTCGTTATCACAGTGGCATGACATTGACCATGGGAGTTGGTAAGACAGCACAAATGGATCTGGGACCAGCCTAGTAAGAAGTGGGGGGGGGAAGGTATTTCTCAACCAGGTTTCCTAGATTAATGACCAGTACAGTACTTCTAGAAATCATTCTAGAACTCATTCTGATTCTGAATGTTCCACTGCTATACCATTCAATGTGAACCAACaacatcccagctagcacatttggttccttggaagttgtgggaacctACGTTTTTgatttcccattggttctgggaatgtGTCCGTAAGTTTCATGACCTGTAAAACTGAagttttttttaaacgttctgagaacggaagtgacatttttgcctgttctgggaacgtACATTTTTATTGGGcggggaggttctgagaatgtttaactatggttccagggaggttctgggaacattttactatggttccagggaggttctgagaacgttttactatggttccagggaggttctgagaacctTTTACTAcggttccctgaaagttttcctgggaggttttattaacctTATGAGAACGGAAATTATTGGTTATTTGACGGTAATTAAATAACGTTCTGAcaacatgtttcaataagacttttaataatactgctagcttaggttaactgttttTGTTGTGGCACGGCATCAGTGAGATTTTAACCTATGATTTTCTATTGTCTATCCGTGGAATTAGTCACAAGGATGGCGCTAGaatgccattttttttttactcatacaAATCTGTTCCATtttgtctattcaaacagaccccatttcaaaacaaacaagcactcgttaagatcaggtgtggccaattagtgggcgcggccaacacacctgaacatacttaacaagatagagagagttttgttgatgcagAGAACAGAATGTATAGGTTTTTAAAGAACATTATTATAATGTACTTTGAGTTTTTCATGGAAACGTTCTGAGAACGTCATTTTAAATAGGACCATaatgaagtactgaaattcccacagaagaacgttgtttcttaacgttctctgaatgTATTGAGAACataactttaaatagaaccacgagGAAACCCGTAGAAAATGTTATGCTGGGCCTCGCAACTGGCTCagtggttcgagtccaggctctggcggcgcacaattgtcgtccgggttaggggaggtttggccggcagggatgttcttgtcccatcgcgcactagcgattcctgtggcgggcagaggcgcaatgcacgctgacacggtcgccaggtatacagtgtttcctccgacacattggtgcggctgcctttccgggttaagcgagcagtgtgtcaagaagcagtgcggcttggctgggttgtgtttcggaggacacacggctctcgaccttcgcctctcctgagtccgtacaggagttgcagcgatgggacaagattgtaacaatttggataccacgaaaaaggggtataAAAAATAATGTTATGCTGATTTAATGACATTCCCACATAGGAAAATAGGGTTCTGGTTATGTGCTAGCTGGATAGCCTGTACCATTCCCAGAACACTGTGGGAAGGTTTTATGCTAAATAACTAGGACAAGACAACGCTCTCACCAAGATCTAAGAAACTTATGGTTCTCAGaccgttatgtgctagctgggaatgGTCTTACTCTTCTTTCTGTACAATGGACTAACATCTATTCCCTCACTATCTACTAACATCTATTCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCACAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATATATTACCTCACTATCTACTAACATCTATTACCTCTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTACCTCTATCTACTAACATCTATTACATCACTATCTACTAACATCTATTCCCCCCAGCCCTCACTATCTACTAACATCTATTACCTCACTATCTACTAACATCTATTCCCCCAGCCCTCATTATCCAgtttaaaatataatttatttaCCTAACTATTCAAGAAGCAGACTAGTATGAAGTGATAGAGACAAATATAATATAGTCAACTGCAGTGAAACTGTTTATAATGTTTTACATTTCTCTGTCTACCTCTAAGCCAGCCCGTCACAACCTACTCACCTAGCCAACCCGTCACAaccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883792 lncRNA upstream 698 62040345 ~ 62042161 (+) True G1646475
TU1883715 lncRNA upstream 19125 61962651 ~ 62023734 (+) True G1646412
TU1883593 lncRNA upstream 37208 61936517 ~ 62005651 (+) True nin
TU1883718 lncRNA upstream 77372 61964765 ~ 61965487 (+) True G1646414
TU1883696 lncRNA upstream 127362 61914661 ~ 61915497 (+) True G1646394
TU1883810 lncRNA downstream 29771 62077257 ~ 62077714 (+) True G1646485
TU1883811 lncRNA downstream 35698 62083184 ~ 62084341 (+) True G1646486
TU1883814 lncRNA downstream 41676 62089162 ~ 62089482 (+) True G1646489
TU1883816 lncRNA downstream 42861 62090347 ~ 62090561 (+) True G1646491
TU1883838 lncRNA downstream 101265 62148751 ~ 62157243 (+) False G1646510
XM_036955311.1 mRNA upstream 3966 62020594 ~ 62038893 (+) False sav1
XM_036955312.1 mRNA upstream 3966 62020594 ~ 62038893 (+) False sav1
XM_036955310.1 mRNA upstream 3966 62020595 ~ 62038893 (+) True sav1
XM_036955303.1 mRNA upstream 33558 61924327 ~ 62009301 (+) False nin
XM_036955314.1 mRNA downstream 47955 62095441 ~ 62210453 (+) False map4k5
XM_036955315.1 mRNA downstream 47955 62095441 ~ 62210453 (+) False map4k5
XM_036955316.1 mRNA downstream 47955 62095441 ~ 62210453 (+) False map4k5
XM_036955317.1 mRNA downstream 47955 62095441 ~ 62210453 (+) False map4k5
XM_036955318.1 mRNA downstream 47955 62095441 ~ 62210453 (+) False map4k5
TU1883513 other upstream 481775 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 697705 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 751018 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 839507 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1303902 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 96697 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 439515 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 969469 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 1027663 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1155270 63202756 ~ 63204057 (+) False G1647477

Expression Profile