RNA id: TU1883816


Basic Information

Item Value
RNA id TU1883816
length 215
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1646491
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 62090347 ~ 62090561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgctgtagaggatcagttcattagagttaccagtctctcgtgagaaccgccacaggaaaggaagacccagagttacctctgtggcagaggatcagttcattagagttacctctgctgtagaggatatgttcattagagttacctctgctgtagaggatcaCTTCTttagagttaacagcctcagaaattgcagtccaaataaatgcttcaagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1883814 lncRNA upstream 865 62089162 ~ 62089482 (+) True G1646489
TU1883811 lncRNA upstream 6006 62083184 ~ 62084341 (+) True G1646486
TU1883810 lncRNA upstream 12633 62077257 ~ 62077714 (+) True G1646485
TU1883800 lncRNA upstream 33751 62042859 ~ 62056596 (+) False G1646476
TU1883798 lncRNA upstream 42861 62042859 ~ 62047486 (+) False G1646476
TU1883838 lncRNA downstream 58190 62148751 ~ 62157243 (+) False G1646510
TU1883839 lncRNA downstream 59395 62149956 ~ 62157243 (+) True G1646510
TU1883840 lncRNA downstream 66778 62157339 ~ 62157659 (+) True G1646511
TU1883777 lncRNA downstream 185618 62276179 ~ 62276454 (+) True sos2
TU1883880 lncRNA downstream 191220 62281781 ~ 62282159 (+) True G1646543
XM_036955311.1 mRNA upstream 51454 62020594 ~ 62038893 (+) False sav1
XM_036955312.1 mRNA upstream 51454 62020594 ~ 62038893 (+) False sav1
XM_036955310.1 mRNA upstream 51454 62020595 ~ 62038893 (+) True sav1
XM_036955303.1 mRNA upstream 81046 61924327 ~ 62009301 (+) False nin
XM_036955314.1 mRNA downstream 4880 62095441 ~ 62210453 (+) False map4k5
XM_036955315.1 mRNA downstream 4880 62095441 ~ 62210453 (+) False map4k5
XM_036955316.1 mRNA downstream 4880 62095441 ~ 62210453 (+) False map4k5
XM_036955317.1 mRNA downstream 4880 62095441 ~ 62210453 (+) False map4k5
XM_036955318.1 mRNA downstream 4880 62095441 ~ 62210453 (+) False map4k5
TU1883513 other upstream 529263 61558041 ~ 61561084 (+) True G1646294
TU1883395 other upstream 745193 61344787 ~ 61345154 (+) True G1646225
TU1883202 other upstream 798506 61279819 ~ 61291841 (+) False LOC110498404
TU1883226 other upstream 886995 61202358 ~ 61203352 (+) True G1646089
TU1882392 other upstream 1351390 60728557 ~ 60738957 (+) True G1645444
TU1883836 other downstream 53622 62144183 ~ 62145290 (+) True G1646509
TU1883744 other downstream 396440 62487001 ~ 62493719 (+) True srsf5a
TU1884898 other downstream 926394 63016955 ~ 63018688 (+) True G1647342
TU1884975 other downstream 984588 63075149 ~ 63077143 (+) True G1647411
TU1885075 other downstream 1112195 63202756 ~ 63204057 (+) False G1647477

Expression Profile